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Name : secD (Avin_40460) Accession : YP_002801157.1 Strain : Azotobacter vinelandii DJ Genome accession: NC_012560 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 4095688 - 4097556 bp Length : 1869 bp Strand : - Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGCTCAACAAGTATCCCCTGTGGAAGTATCTGCTGATCCTGGCCGTGCTGCTGGTCGGCATTGTCTATTCCGCACCCAA TCTCTTTCCCGACGACCCGGCCATCCAGATCAGCGGGGCAAGCGCGGCCCGCCAGATCGGACAGGGCGATCTCGAGCATG TCGGCAAGGCGCTGGCCGAGGCCGGCATCGCCGTCAAGGCGAGCAGCCTGACCGATGAAGGCAAGACCGGACTGTTGCGT CTGGTCGACCAGGGACGCCAACTGGAGGCCAAGGACGTGGCGCGCAAGGTGCTCGGCGACGACTACGTGGTCGCGCTGAA CCTGGCGCCGACCACGCCCGGCTGGCTGCGCGCCCTGGGCGCCAATCCGATGAAACTGGGCCTGGACCTGTCCGGCGGCG TGCATTTCCTGCTCGAGGTGGACATGGACAAGGCGCTGGATGCGCGTTTGAAGGTGTACGAGGGCGAGGTGAAGAGCCTG CTGCGCAAGGAGCGCCAGCGCTATCGCAGCCTGCCGCAGCAGGACGGTGCCATTCAGCTTGGCTTCGCCGACAGCGGGCA ACTGGAGCAGGCACAGGCGTCGATACGCAAGAATTTCAGCGACTTCGATCTGAGTGCCGGCGAACGCAATGGCCAGCCGG TGCTGCGCCTGACGCTGACGGCGGCGAAGCTGGCGGAGATTCGCGAGTACTCGATCAGGCAGAACCTGACCACGGTGCGC AACCGGGTCAACGAACTGGGCGTGTCCGAGCCGCTGGTGCAGCGCCAGGGCGCCAATCGCATCGTCGTCGAATTGCCCGG CGTGCAGGATACCGCCGAGGCCAAGCGGATTCTCGGCAAGACCGCCAGCCTCGAGTTCCGTATGGCCGCCGAATCCGATG CTTCGCGCGCCATTACCGAGACCTTCGAGTTTCGCGAGGGAGGGCGCCCGCCGGTGGCCTTGGAGCGCAGCCTGATCATC ACCGGTGATCAGGTCACCGACGCCCAGGCCAGCTACGACGAGAACGGCCGTCCGCAGGTCAACATCCGTCTCGATGGCCA TGGCGGCGAATTGATGAACCGGGCGACCCGCAACAGCGTCGGGCGCGCCATGGCCGTGTTGTTCATCGAGCAGAAGCCGG TGACCCGCTACGTCAAGCAGACGATCGACGGCGTCGAGAAGGAGGTGGCGGTCGAAACCTTCCGGGAGGAGAAGAAGATC ATCAGCCTGGCGACCATCCAGTCGCCGCTCGGCAGCCAGTTCCGCATCACCGGCCTCAATGGCCAGGGCGAGTCCTCGGA GCTGGCGTTGCTGCTGCGTGCCGGTGGCCTGGCGGCGCCGATGTACTTCGCCGAGGAGCGTACCCTGGGGCCGAGCCTGG GGGCGGAGAACATCCAGTTGGGCATCCAGGCCTCGCTGTGGGGATTCCTCTTCGTCACCCTGTTCATGCTGCTGATCTAC AAGTTCTTCGGCCTGCTGGCCGCGGTGGCGCTGGCCTTCAACATGGTGCTGCTGGTGGCGCTGATGTCGCTGCTCGGCGC GACCCTGACCCTGCCGGGCATCGCCGGCATAGTGTTGACCATGGGCATGGCGGTGGATGCCAACGTGCTGATCTTCTCGC GCATCCGCGAGGAAATCGCCAATGGCCTGTCGGTCCAGCGGGCCATCCACGAAGGCTTCGACCGTGCCTTCTCGGCGATT CTCGACGGCAACCTGACCACTCTGCTGGTGGGCGGAATCCTGTTCGCCATGGGGACCGGGCCGGTCAAGGGCTTTGCCGT GACCATGTCGCTGGGGATCGTCACCTCCCTGTTCACCGCCATCATCGTGACCCGCGGCATGGTCAACCTGATCTACGGCG GCCGCGATCTGAAGAAACTGTGGATTTGA Protein sequence : MLNKYPLWKYLLILAVLLVGIVYSAPNLFPDDPAIQISGASAARQIGQGDLEHVGKALAEAGIAVKASSLTDEGKTGLLR LVDQGRQLEAKDVARKVLGDDYVVALNLAPTTPGWLRALGANPMKLGLDLSGGVHFLLEVDMDKALDARLKVYEGEVKSL LRKERQRYRSLPQQDGAIQLGFADSGQLEQAQASIRKNFSDFDLSAGERNGQPVLRLTLTAAKLAEIREYSIRQNLTTVR NRVNELGVSEPLVQRQGANRIVVELPGVQDTAEAKRILGKTASLEFRMAAESDASRAITETFEFREGGRPPVALERSLII TGDQVTDAQASYDENGRPQVNIRLDGHGGELMNRATRNSVGRAMAVLFIEQKPVTRYVKQTIDGVEKEVAVETFREEKKI ISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTLGPSLGAENIQLGIQASLWGFLFVTLFMLLIY KFFGLLAAVALAFNMVLLVALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIANGLSVQRAIHEGFDRAFSAI LDGNLTTLLVGGILFAMGTGPVKGFAVTMSLGIVTSLFTAIIVTRGMVNLIYGGRDLKKLWI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 80 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 80 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 80 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 80 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 80 |
