|
Name : lysS (NGR_c29590) Accession : YP_002827455.1 Strain : Sinorhizobium fredii NGR234 Genome accession: NC_012587 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 3102232 - 3103728 bp Length : 1497 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGAACGAGAAGACAGCAACGGCCAGCCTTTCCTCCGACGCGACCGAAGTGCGCGCCCAGAAGCTGAAGCTGCTGCGTGA GCAGATCGGCGATGTCTATCCGGCGCATTTCCACCGGACGATGACCAATGCGGAACTCGCGGTGAAATATGAGGGCCTGG AGCCGGACACCGAAACGCAAGACGTCGTGACCGTTGCCGGCCGCGTCTTTTCCTCGCGCAACTCCGGCATGTTCATGGAT CTCCATGACGCTTCCGGCAAGATCCAGATCTTCTCGCACAAGGACACGACGCCGGAAGAGGCGCGGGCGCTGCTGCCGAT GATCGACATCGGCGACATCATCGGCGTTACGGGCATCGTTCGCCGGACCAAGCGCGGCGAGCTGACGATCAACGCGCAAG CGATCACCATGCTGACCAAGTCGCTGCTTCCGATGCCGGAGAAGTGGCATGGTCTTTCGGATATCGAGCTGCGCTACCGC AAGCGCCATCTCGACATCATGACCAATGAAGAGTCGAAGCTCCGCTTCCAGCAGCGCAGCCGGATCGTTTCGGGGATCCG CCGATTCATGGAAAACGACGGCTTCATGGAAGTCGAAACGCCGATGCTGCATTCGGTCTATGGCGGCGCAACCGCCGAGC CGTTCAAGACGCATCACAATACGCTGAAGCTCGACATGTACCTGCGCATCGCGCCGGAACTCTATCTGAAGCGCACGCTG GTTTCGGGGCTGACCGACAAGGTCTTCGAGATCAACCGCAACTTCCGCAACGAAGGCGTCTCCACCCGGCACAATCCGGA ATTCACCATGATGGAGTGCTATTGGGCCTATGCCGACTACGAGGACATCATGGACCTCGTCGAGCGGATGTTCGCCGAAC TGGCGGTCTCGATCCACGGCACGACGGAATTCGCCTATGGCGACAAGGAAATCTCCTTCAAGGGTCCGTTCCGACGCGTG CCCATGCCGGACGCCGTCAAGGAAGTGACCGGTATCGACTTCATCGCGATCAAGACCGACGAAGAAGCCCGCGCTGCGAC CAGAGCTGCCGGCTTCGAGGTGGAGAAAGACTGGACCTGGGGCGAATGCCTCGCTTTCGTCTTCGAAGAGAAGGTAGAAC CGACGCTGATCCAGCCGGCCCACGTCACGCACTTCCCGAAGGACATCTCGCCCTTCGCCAAGGAAGTGCCGGGCGAGCCG CGCCTCGTCGAGCGTTTCGAGACCTATTGCAACACCTGGGAACTCGGCAACGCCTTCTCGGAACTCAACGATCCGGAAGA GCAACGCGCCCGCATGGTCGAGCAACTTGAGCAGGCGCATGCGCGCGGCGAAAAGGCCAAGCAGCTCGACGACGAATTCC TCGATGCGATCGACCAGGGCATGCCGCCCGCCGGCGGCCTCGGCATCGGCGTCGACCGGCTGATCATGCTGCTCACCAAC GCGCCGTCGATCCGCGACGTCATTCTCTTCCCGGCCCGCCGCCACAAGGCCGACTGA Protein sequence : MNEKTATASLSSDATEVRAQKLKLLREQIGDVYPAHFHRTMTNAELAVKYEGLEPDTETQDVVTVAGRVFSSRNSGMFMD LHDASGKIQIFSHKDTTPEEARALLPMIDIGDIIGVTGIVRRTKRGELTINAQAITMLTKSLLPMPEKWHGLSDIELRYR KRHLDIMTNEESKLRFQQRSRIVSGIRRFMENDGFMEVETPMLHSVYGGATAEPFKTHHNTLKLDMYLRIAPELYLKRTL VSGLTDKVFEINRNFRNEGVSTRHNPEFTMMECYWAYADYEDIMDLVERMFAELAVSIHGTTEFAYGDKEISFKGPFRRV PMPDAVKEVTGIDFIAIKTDEEARAATRAAGFEVEKDWTWGECLAFVFEEKVEPTLIQPAHVTHFPKDISPFAKEVPGEP RLVERFETYCNTWELGNAFSELNDPEEQRARMVEQLEQAHARGEKAKQLDDEFLDAIDQGMPPAGGLGIGVDRLIMLLTN APSIRDVILFPARRHKAD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 5e-96 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_002827455.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 3e-96 | 47 |
