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Name : PFLU5627 (PFLU5627) Accession : YP_002875121.1 Strain : Pseudomonas fluorescens SBW25 Genome accession: NC_012660 Putative virulence/resistance : Virulence Product : RNA polymerase sigma factor Function : - COG functional category : K : Transcription COG ID : COG1595 EC number : - Position : 6167161 - 6167679 bp Length : 519 bp Strand : + Note : Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate DNA sequence : TTGTCGTCAATCCAGAACCCACACAGTGAGCTTGTTGGCGCGTTGTATCGCGACCATCGTGGCTGGCTGTTGGCGTGGCT GCGACGCAATGTGGCCTGTCCTAGCCGCGCCGAGGACCTGAGCCAGGACACCTTCATGCGCCTGCTTGGCCGTGACGAGT TACGCGAACCCCGCGAGCCCCGCGCGTTTCTCATCGCGATCGCCAAGGGCCTGCTGTTCGATTATTTCCGTCGCGCTGCC CTGGAACAGGCCTACCTCACCGAACTGATGCTGATCCCCGAAAGCGAACACCCTTCGCCGGAAGCCCAGCAACTGATCCT CGAAGACCTCAAGGCCATCGACCGCCTGCTCGGCAAATTGTCGAGCAAGGCCCGCGCAGCCTTTCTCTACAACCGCCTCG ACGGCATGGGCCACGCAGACATCGCCCAACGCCTCGGCGTGTCAGTACCGCGCGTGCGCCAATACCTGGCTCAGGGCATT CGCCAGTGCTACATCGCGCTGTATGGCGAGCCGCAGTGA Protein sequence : MSSIQNPHSELVGALYRDHRGWLLAWLRRNVACPSRAEDLSQDTFMRLLGRDELREPREPRAFLIAIAKGLLFDYFRRAA LEQAYLTELMLIPESEHPSPEAQQLILEDLKAIDRLLGKLSSKARAAFLYNRLDGMGHADIAQRLGVSVPRVRQYLAQGI RQCYIALYGEPQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AAL08458.1 | FecI | Virulence | SRL | Protein | 7e-34 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PFLU5627 | YP_002875121.1 | RNA polymerase sigma factor | VFG1049 | Protein | 3e-34 | 45 |
