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Name : rscC (PFLU0721) Accession : YP_002870386.1 Strain : Pseudomonas fluorescens SBW25 Genome accession: NC_012660 Putative virulence/resistance : Virulence Product : putative type III secretion protein Function : - COG functional category : N : Cell motility COG ID : COG1450 EC number : - Position : 823771 - 825912 bp Length : 2142 bp Strand : - Note : - DNA sequence : ATGCATAACAAGATCTCTAAGCATACCTGCTTGCATATTGATCCGCCTGACACTTCATCCAGGCGCGCCAAATGGCAATG GCTGGTTCTATTAGGCTGCATAATGGCTCCGGCGCACAACCTACTCGCAGCCATCCCCGCCGAGTGGAAAAACACCGCCT ACGCCTACGAGGCCGACCACAAACCACTACGTGAAGTGCTCGAAGACTTCGCCCAGACCTTTGGCACGCAACTGCAAATC GAAGGCTTGCTGGAGGGCGACGTCAACGGCAAGATCCGCGCGAATACCCCGCAATCCATGCTGGATAGACTCGGCGTTGA GCACCGTTTTCAGTGGTACCTCTACAACAACACCTTGTTCGTCAGCACGCTGGACCAGCAGGAATCCGCGCGCCTGGAAG TCTCCTCGGAGACTATTTCCGACCTCAAGCAAGCGCTGACCGATATCGGCCTGCTTGATAGCCGTTTCGGCTGGGGCGAA TTGCCTGAAGACGGTGTCGTATTGGTCTCCGGCCCCAAAACCTACATCGACCAGATCAAGCAGTTCAGCAGCAAACGCCG CTCGGCGGATGAAAAACAGAGCGTGCTCAGCTTCCCACTCAAGTTCGCCAATGCCGCAGACCGCAAAGTGGACTACCGCG GTGAAAAGCTCGTTGTCCCCGGCGTCGCGAACATTTTGCGGGGACTCTTGGAGCCCCGCTCAGCCTCGACGCTAACGGGG ATGAGCCAACCCGATTCATCCCAGCCGTCCCCTCTAACCCCCAATGTACCTCGGCTGGGCAATCCGTTACTGGGCCAAAT GCTCGGTGCAAATGGCAACGCAGGACAATTGGACACGGGTCCGACAGTCACGCCACGCGCCCCGGTCTCCAAGAGCCGGA TCCGCGTCGAAGCCGATGTGCGCAATAACGCTGTGCTGATCTATGACCTGCCGGAACGCCAGGCCATGTACCGCGACCTG ATCACTCAACTCGACGTCGCGCGCAAGTTGATCGAAATCGACGCAATCATTCTCGATATCGAACGTACGCAATTGCGTGA ATTTGGGGTGAACTGGGGTTTCCAGAACAGTCGCTTCCGCGGAGGCGTCAACATGGCACCTGGCACCTCGTCGCAGGTGT CGATTGAAAACCGTGATCGTTTTTACGCCGACATCCGCGCACTGGAGGCCAAGGGCCTGGCAACCATGGTCTCCAACCCT TCTGTGCTCACCCTGGAAAACCAGCCGGCGGTGATCGACTTCAACCGCACCCAATACATCTCCCCCGGCAGAGATTACGC AACCATTTTGCCTGTCACGGTGGGCACCAGCCTCCAAGTGGTTCCCCGGGTAACGACGGGCCGCGGCGTTCACCAGATCC ATTTGGTCGTCGATATCGAAGACGGTAATTTCGACGAAACCAATCCCGAGCGAGACCCCAATCACCCCGACGTTCGCCGG GGCAAGGTCAGCACCCAGGCCGTGATGCAGGAGAAGCGTTCGCTGGTAGTGGGTGGCTTCCATGTCACAGACAGTTCCGA CCAGCAAAAGAAGATTCCGCTGCTGGGGGATATTCCGTTGCTGGGCAAGACGCTGTTCTCTTCGACAGAACGCCACAACA ATCGCCGTGAACGCTTGTTTATCCTGACACCCCGCGTCATCGGCGACCAGGACGACCCGTCGCGCTACTTGCCACAGGAC GACCAGGCTGAGTTACAAGCGGCCCTCACACCACTGGCCAGGCGCTATTCGCCGCATCAGCCGGTGATCAAACGCAGTGA CATCATCACGACGCTGGCCCGCCTAGTCAGTGGGGAAGTGCCCAAAGCGTTCAACGCCGCGCCGATGCCGCTGGGGCTGA ACACCTTGTGCAGCACCCGTGACTTGCTGGCGCTGAATACCGAGCGCAGCCAGTGGTACGCCGGTCCGGACTACAACGTG GCGGTGGTCGTACTGCGCAACCAGTTCAAACGCAATGTGCGTATCGATGAAAAGGAATGCAGCAACTCGCAGACCCTGGC AGTCACCGTATGGCCGCGTGCCTGGCTCAAACCGGGTGAAGAAGCCGAGGTGTTTATTGCCATGCGCCCCGTGGTGAAGG ATGAACACCTCAGTGTGCCCCGCCCCTCCTTGATCACTCCCACTCAGAAGGCCACGCCATGA Protein sequence : MHNKISKHTCLHIDPPDTSSRRAKWQWLVLLGCIMAPAHNLLAAIPAEWKNTAYAYEADHKPLREVLEDFAQTFGTQLQI EGLLEGDVNGKIRANTPQSMLDRLGVEHRFQWYLYNNTLFVSTLDQQESARLEVSSETISDLKQALTDIGLLDSRFGWGE LPEDGVVLVSGPKTYIDQIKQFSSKRRSADEKQSVLSFPLKFANAADRKVDYRGEKLVVPGVANILRGLLEPRSASTLTG MSQPDSSQPSPLTPNVPRLGNPLLGQMLGANGNAGQLDTGPTVTPRAPVSKSRIRVEADVRNNAVLIYDLPERQAMYRDL ITQLDVARKLIEIDAIILDIERTQLREFGVNWGFQNSRFRGGVNMAPGTSSQVSIENRDRFYADIRALEAKGLATMVSNP SVLTLENQPAVIDFNRTQYISPGRDYATILPVTVGTSLQVVPRVTTGRGVHQIHLVVDIEDGNFDETNPERDPNHPDVRR GKVSTQAVMQEKRSLVVGGFHVTDSSDQQKKIPLLGDIPLLGKTLFSSTERHNNRRERLFILTPRVIGDQDDPSRYLPQD DQAELQAALTPLARRYSPHQPVIKRSDIITTLARLVSGEVPKAFNAAPMPLGLNTLCSTRDLLALNTERSQWYAGPDYNV AVVVLRNQFKRNVRIDEKECSNSQTLAVTVWPRAWLKPGEEAEVFIAMRPVVKDEHLSVPRPSLITPTQKATP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcC | AAT96152.1 | HrcC | Virulence | T-PAI | Protein | 8e-144 | 47 |
| hrcC | AAT96206.1 | HrcC | Virulence | T-PAI | Protein | 1e-144 | 47 |
| hrcC | AAB05085.2 | HrcC | Virulence | Hrp PAI | Protein | 1e-142 | 46 |
| hrcC | NP_791216.2 | outer-membrane type III secretion protein HrcC | Virulence | Hrp PAI | Protein | 5e-143 | 46 |
| hrcC | ABA47303.1 | HrcC | Virulence | S-PAI | Protein | 1e-144 | 46 |
| hrcC | AAT96354.1 | HrcC | Virulence | S-PAI | Protein | 2e-137 | 45 |
| hrcC | AAT96315.1 | HrcC | Virulence | S-PAI | Protein | 2e-136 | 45 |
| hrcC | AAT96274.1 | HrcC | Virulence | S-PAI | Protein | 6e-136 | 45 |
| hrcC | AAC34756.1 | HrcC | Virulence | Hrp PAI | Protein | 3e-134 | 44 |
| hrcC | AAB49179.1 | HrcC | Virulence | Hrp PAI | Protein | 2e-133 | 44 |
