Gene Information

Name : VCD_000183 (VCD_000183)
Accession : YP_002875947.1
Strain :
Genome accession: NC_012667
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : S : Function unknown
COG ID : COG3272
EC number : -
Position : 210216 - 211169 bp
Length : 954 bp
Strand : -
Note : -

DNA sequence :
ATGCAGACCACGCCACTCAAAATTGGGATCAGTGCTTGTCTACTTGGAGCAAAAGTACGCTTCGATGGCGGGCATAAAAT
TAGCCACTTCGTGACCAATGAGCTCGATCGTTACGCGGAGTTTGTTTCTGTTTGTCCAGAAATGGGAATGGGGCTACCTG
TTCCGCGTCCCACATTACGACTTATCTCGGAAAATGAACGGATTGCCTTGGTGGAAACCAAAGATAGCTCGCGTGATCAC
ACCGCAGCGTTAGAGAGTTACTCACAGCAGAAAGTTGCTGAGTTACAACATGCTGAGTTGTGTGGATACATCGTCTGCGC
AAAATCACCCAGTTGTGGTATGGAGCGTGTCAAAGTCTACAAGCACAATGGCACCGAAAAAGACGGCGTTGGCGTCTATA
CCCGAATTTTGATGGAAAAAATGCCGTGGCTACCGATTGAAGAAGATGGTCGATTGAATGATCCGGTCTTGCGGGAAAAT
TACATCACCCGAGTTTTCTGTTTGCATGATTTTTACACCAGCATGGGCGATGCGCCGAGCGCGAAAAAAATCGTCGAATT
TCACTCTCGCTACAAATTAACCCTGATGGCACATAACCCACAGGCGTATCGCGTGTTAGGGCGCTTAGTGGCGAATGTGA
AACAGTATCCACTGGATTCTTTTATCCAAGAGTACCGCTTAGGTTTGATGCAAGCTCTGGCTCACCGTGCTAGCCGCAAA
AATAACACGAATGTGCTGATGCATTTGCAAGGTTATTTCAAGCGCTCGCTGAACAAATTACAAAAAGCCGAACTGGCTCA
AGTGATCGAGAGCTATCGGGTGGGTGAGCTGCCACTGTTAGCGCCCATCACGCTACTCAAACATTATCTCGCTCTGTTTC
CTGATGCTTATCTCGCTCAGCAGCGCTACCTAAACCCTTATCCTCAGGAGTTGAAACTACGTTATGGTTTGTGA

Protein sequence :
MQTTPLKIGISACLLGAKVRFDGGHKISHFVTNELDRYAEFVSVCPEMGMGLPVPRPTLRLISENERIALVETKDSSRDH
TAALESYSQQKVAELQHAELCGYIVCAKSPSCGMERVKVYKHNGTEKDGVGVYTRILMEKMPWLPIEEDGRLNDPVLREN
YITRVFCLHDFYTSMGDAPSAKKIVEFHSRYKLTLMAHNPQAYRVLGRLVANVKQYPLDSFIQEYRLGLMQALAHRASRK
NNTNVLMHLQGYFKRSLNKLQKAELAQVIESYRVGELPLLAPITLLKHYLALFPDAYLAQQRYLNPYPQELKLRYGL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY1731 NP_456139.1 putative pathogenicity island protein Not tested SPI-2 Protein 8e-78 51
t1257 NP_805060.1 pathogenicity island protein Not tested SPI-2 Protein 8e-78 51
orf319 NP_460354.1 inner membrane protein Not tested SPI-2 Protein 6e-78 51
SC1410 YP_216397.1 inner membrane protein Not tested SPI-2 Protein 4e-78 51
ORF 319 CAB37410.1 - Not tested SPI-2 Protein 4e-78 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VCD_000183 YP_002875947.1 hypothetical protein VFG0490 Protein 3e-78 51