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Name : secD (VCD_003583) Accession : YP_002879309.1 Strain : Genome accession: NC_012668 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 2866119 - 2867972 bp Length : 1854 bp Strand : - Note : TC 3.A.5.1.1; part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytop DNA sequence : GTGCTAAACCGTTATCCGTTATGGAAGTATCTGATGGTGATGTTAACCATCGCCGTTGCAGCCTTGTATGCACTTCCAAA TATCTACGGTGAAGATCCAGCTATCCAAATAACAGGGGCGCGTGGCGCCTCTGTTGATATGTCAACGCTGGATGCTGTCA CCGATGCGCTCAATAAAGCGCAACTCTCCCAAAAATCCATTGCTCTTGAAAATGGCTCAATCCTTGTTCGTTTCAATGAT ACGGATACGCAAATCAGCGCCCGAGATATCATCAGTGAAGCGTTAGGTAAGGATAAAATCGTCGCGTTAAACCTCGCTCC TTCAACGCCATATTGGCTAGAGTCAATTGGTGCTGCACCAATGAAACTCGGCCTTGATCTGCGTGGTGGTGTGCACTTCC TGATGGAAGTGGATATGGATGCCGCGATGGAAAAATTGGTCAGCCAACAAGAAGAAGCTTTCCGCAGTGATCTGCGTGAC GAGAAAATTCGTTACCGCGCGATCCGTCCATTATCGGATGCGGTTGAAGTGACCCTGCGTGATGCCGAGCAGCTTGCGCA AACTAAGCTGCTTCTGGAGTCGAAACACCGTGATATGACCTTTACGACTTCAGAATCCGATGGCCGTTTTGTGCTCGTGG CTAAGTTTACCGAAGCTCGCTTACAGGAAATTCGCAACTACGCCGTTGAGCAGAACATCACTATTTTGCGTAACCGGGTG AACGAACTGGGTGTGGCTGAGCCTCTGGTTCAACGCCAAGGTGCGACACGTATCGTGGTAGAGCTGCCGGGTGTACAAGA TACAGCGCGTGCTAAAGAAATCTTAGGCGCGACCGCAACCCTTGAATTTCGTGAAGTGGACGATAAAGCCGACCTTGCCG CTGCGGCAGCAGGACGTGCGCCTGCTGGCAGCGAAATCAAGTTCGATCGTAATGGTCGTCCTGTGGTGCTGAAAAAGCGC GTGATTCTGGGTGGTTCAAGCATTACCGATGCAAGCTCAAGCGCCGACGAATATGGTCGCCCACAGGTGAACATTTCGCT CGATAGCGAAGGCGGCAACAAGATGTCAGCGTTCTCGAAAAAGAACATTGGCAAGCTGATGGCGACGGTGTTTGCCGAAT ACAAAGACAGCGGTAAGCGCTCTCCTGAAGGTAAAGTCATTCTGACCAAGCATGAAGAAGTGATTAACCAAGCGACGATT CAGTCGGCATTGGGACGTAACTTCCGTATTACTGGGATTGATTCACCGGCAGAAGCGCATAACCTTGCTCTGCTATTGCG TGCCGGTGCTTTGATTGCGCCAATTTCTATCGTCGAAGAGCGCACCATTGGTCCATCAATGGGTCAGCAGAATATCGATA TGGGTATTCAGGCCTGTATTTGGGGTATGGTGGCGGTAATGCTGTTTACGGTTCTTTACTACCGTAAGTTTGGCATGATT GCTAACATCGCACTAATGGCGAACCTCGTGTTGATCATTGGCGTAATGTCGATGATCCCGGGCGCAACCATGACCTTGCC GGGTATTGCTGGTATCGTGTTGACGGTCGGTATGGCGGTCGATGCCAACGTACTGATTTTCGAGCGTATTCGTGAAGAGC TACGCGAAGGAAAAAATCCGCAGCAAGCGATTCATCAAGGTTACGCTAACGCATTCAGTACCATTGCCGATGCCAACATC ACCACCTTAATTACGGCGATCATTTTGTTTGCCGTTGGTACAGGGGCGATTAAAGGCTTCGCAGTGACGCTGTCTATCGG TATTTTAACCTCTATGTTTACCGCGATTGTGGGTACACGTTGTATCGTGAACCTGCTGTATGGCGGCAAACGTATCAACA AACTGTCGATCTGA Protein sequence : MLNRYPLWKYLMVMLTIAVAALYALPNIYGEDPAIQITGARGASVDMSTLDAVTDALNKAQLSQKSIALENGSILVRFND TDTQISARDIISEALGKDKIVALNLAPSTPYWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRD EKIRYRAIRPLSDAVEVTLRDAEQLAQTKLLLESKHRDMTFTTSESDGRFVLVAKFTEARLQEIRNYAVEQNITILRNRV NELGVAEPLVQRQGATRIVVELPGVQDTARAKEILGATATLEFREVDDKADLAAAAAGRAPAGSEIKFDRNGRPVVLKKR VILGGSSITDASSSADEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEVINQATI QSALGRNFRITGIDSPAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYRKFGMI ANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELREGKNPQQAIHQGYANAFSTIADANI TTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIVGTRCIVNLLYGGKRINKLSI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 1e-117 | 50 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 4e-117 | 50 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 4e-117 | 50 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 4e-117 | 50 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 4e-117 | 50 |
