Gene Information

Name : Bcav_3653 (Bcav_3653)
Accession : YP_002883657.1
Strain : Beutenbergia cavernae DSM 12333
Genome accession: NC_012669
Putative virulence/resistance : Virulence
Product : ATP-dependent chaperone ClpB
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0542
EC number : -
Position : 4063885 - 4066491 bp
Length : 2607 bp
Strand : -
Note : PFAM: ATPase family associated with various cellular activities (AAA); C-terminal, D2-small domain, of ClpB protein; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent chaperone ClpB

DNA sequence :
TTGGACACCAAGCTCACCACGAAGTCGCAAGAGGCGATCGCCGCTGCCCTGCAGACGGCGTCGGCCGCCGGCAACCCGCA
TCTCGAGCCCGTTCACCTGCTCGCCGCGCTGCTCGACCAGGCGGGCGGCGTCGCCGTCGCGCTGCTCGACGCCGTCGGCG
CCGACCGCGACCAGCTCGCCGCGCGGGCGAAGGGCGTGCTCGCCACGCTGCCCAGCGCGAGCGGAGCGTCCACGGCCCAG
CCGCAGGCGTCTCGGGCGACGCTCACCGTGGTGCAGTCCGCCGGCGAGGAGGCGCAGGCTCTCGGCGACGAGTACGTCTC
CACCGAGCACCTGCTCGTCGCCCTGGCGGCGAGCTCCGGTGCGGCGGGTGAGCTGCTCACCTCGGCCGGCGCGACGCGCG
AGGCGTTGCTCGCCGCCCTGCCGAACGTGCGCGGAGGCGCGCGCGTGACGTCGCCCGACCCGGAGGGCACGTTCCAGGCC
CTCGAGAAGTACGGGCAGGACCTCACGGCGCGCGCGGCCGAGGGCAAGATCGACCCGGTCATCGGCCGCGACTCCGAGAT
CCGGCGCGTGATCCAGGTGCTGTCCCGGCGGACGAAGAACAACCCCGTGCTCATCGGCGAGCCCGGCGTCGGCAAGACCG
CCGTCGTCGAGGGCCTCGCGCAGCGCATCGTCGCGGGTGACGTGCCCGAGTCGCTCAAGGGCAAGCGCCTCGTCGCGCTC
GACCTCGGCGCGATGGTCGCCGGTGCGAAGTACCGCGGCGAGTTCGAGGAGCGTCTCAAGGCGGTGCTCGACGAGATCAA
GAGCTCCGACGGGCAGATCGTCACGTTCATCGACGAGCTGCACACCGTCGTCGGCGCCGGTGCGTCGGAGGGCGCGATGG
ACGCCGGCAACATGCTCAAGCCGATGCTCGCGCGCGGCGAGCTCCGCATGGTGGGGGCGACGACGCTCGACGAGTTCCGC
GAGCACATCGAGAAGGACCCGGCGCTCGAGCGGCGCTTCCAGCAGGTCTTCGTGGGCGAGCCGAGCGTCGAGGACACGAT
CGCGATCCTCCGTGGCATCGCACCCCGCTACGAGGCGCATCACAAGGTGACGATCGCCGACTCCGCGCTCGTCGCGGCGG
CCACGCTCTCCGACCGCTACATCACCGGGCGTCAGCTCCCGGACAAGGCCATCGACCTCATCGACGAGTCGGCGTCGCGG
CTGCGGATGGAGCTCGACAGCTCGCCGATCGAGGTCGACGAGCTGCAGCGCGCCGTCGACCGCCTCACGATGGAGGAGCT
CGCGCTCGAGCGGGCCGACGACCCGTCGTCGGCCGAACGGCTCGAGAAGCTGCGCGCCGATCTCGCCGACCGGCGGGAGG
AGCTCGCCGGGCTCACCGCTCGGTGGGAGGCCGAGAAGGCCGGGCACAACAGGGTGGGCGACCTCAAGGCGCGCCTCGAC
GAGCTGACGACGGCGGCCGAGCGGGCCATGCGCGAGGGCGATCTCGCCCGCGCGTCGGAGATCCGGTACGGCGAGATCCC
CGAGGTCGAGCGCGAGCTGGTCTCGGCCGAGCGCGACGAGGCGGCCATCGACACCGCGGCCGGCGACGGCGCCGTGCCCA
TGATCGCCGACCGCGTCGGGCCCGACGAGGTCGCCGAGGTGGTCGCGGCGTGGACCGGCATCCCGGCCGGCCGGCTGCTC
GAGGGCGAGTCCCAGAAGCTCCTGCGGATGGAGGACGTCATCGGGCAGCGGCTCATCGGGCAGGGCGACGCGGTACGCGC
GGTGTCGGACGCCGTCCGCCGCGCGCGTGCCGGCGTCGCCGACCCCGACCGGCCCACCGGCTCGTTCCTGTTCCTCGGGC
CCACCGGCGTCGGCAAGACCGAGCTGGCGAAGGCGCTCGCGGACTTCCTGTTCGACGACGAGCGCGCGATCGTGCGGATC
GACATGTCGGAGTACAGCGAGAAGCACTCCGTCGCGCGGCTGGTCGGTGCCCCGCCCGGGTACGTGGGGTACGAGGAGGG
CGGACAGCTCACGGAGGCCGTGCGGCGTCGTCCCTACTCGGTCGTCCTGCTCGACGAGGTCGAGAAGGCGCATCCCGAGG
TGTTCGACATCCTGCTCCAGGTGCTCGACGACGGCCGGCTGACGGATGGCCAGGGCCGCACCGTCGACTTCCGCAATGTC
ATCCTCGTGCTGACGTCGAACCTCGGGTCGCAGTTCCTCGTCGACCCGGCGCTCGACGACGCCACCAAGCGCGAGGGCGT
GATGGCGGCGGTCCGGGCGAGCTTCAAGCCGGAGTTCCTCAACCGGCTCGACGACGTCGTCATCTTCGACGCGCTCAGCG
TGGACGAGCTCGGGGCGATCGTCGACCTGCAGGTCGACCGGCTCGGCGCCCGGCTCGCGGACCGTCGGCTGCGGCTCGAC
GTCACGCCGGCGGCCCGGGAGTGGCTCGCCCTCGAGGGGTACGACCCGGCGTACGGAGCGCGCCCGCTGCGGCGTCTCGT
GCAGCGGGAGATCGGCGACCAGCTCGCCCGGATGCTGCTCGCCGGCGAGGTGGTCGACGGCGCGACGGTCGTCGTCGACC
GGGCCGAGGACGTCACGCGCGAAGGGCTGGTCATCAGCGTGCACTGA

Protein sequence :
MDTKLTTKSQEAIAAALQTASAAGNPHLEPVHLLAALLDQAGGVAVALLDAVGADRDQLAARAKGVLATLPSASGASTAQ
PQASRATLTVVQSAGEEAQALGDEYVSTEHLLVALAASSGAAGELLTSAGATREALLAALPNVRGGARVTSPDPEGTFQA
LEKYGQDLTARAAEGKIDPVIGRDSEIRRVIQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVAGDVPESLKGKRLVAL
DLGAMVAGAKYRGEFEERLKAVLDEIKSSDGQIVTFIDELHTVVGAGASEGAMDAGNMLKPMLARGELRMVGATTLDEFR
EHIEKDPALERRFQQVFVGEPSVEDTIAILRGIAPRYEAHHKVTIADSALVAAATLSDRYITGRQLPDKAIDLIDESASR
LRMELDSSPIEVDELQRAVDRLTMEELALERADDPSSAERLEKLRADLADRREELAGLTARWEAEKAGHNRVGDLKARLD
ELTTAAERAMREGDLARASEIRYGEIPEVERELVSAERDEAAIDTAAGDGAVPMIADRVGPDEVAEVVAAWTGIPAGRLL
EGESQKLLRMEDVIGQRLIGQGDAVRAVSDAVRRARAGVADPDRPTGSFLFLGPTGVGKTELAKALADFLFDDERAIVRI
DMSEYSEKHSVARLVGAPPGYVGYEEGGQLTEAVRRRPYSVVLLDEVEKAHPEVFDILLQVLDDGRLTDGQGRTVDFRNV
ILVLTSNLGSQFLVDPALDDATKREGVMAAVRASFKPEFLNRLDDVVIFDALSVDELGAIVDLQVDRLGARLADRRLRLD
VTPAAREWLALEGYDPAYGARPLRRLVQREIGDQLARMLLAGEVVDGATVVVDRAEDVTREGLVISVH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY0294 NP_454876.1 ClpB-like protein Not tested SPI-6 Protein 6e-102 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Bcav_3653 YP_002883657.1 ATP-dependent chaperone ClpB VFG2076 Protein 5e-115 46
Bcav_3653 YP_002883657.1 ATP-dependent chaperone ClpB VFG2084 Protein 8e-110 44