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Name : GBP346_A3474 (GBP346_A3474) Accession : YP_002898148.1 Strain : Burkholderia pseudomallei MSHR346 Genome accession: NC_012695 Putative virulence/resistance : Unknown Product : glycolate oxidase, subunit GlcD Function : - COG functional category : C : Energy production and conversion COG ID : COG0277 EC number : - Position : 3362534 - 3364027 bp Length : 1494 bp Strand : + Note : identified by match to protein family HMM PF01565; match to protein family HMM PF02913 DNA sequence : ATGAACGCCCCCGCCGAACTGTCGGCCGATCTGCGCGCGCAGCGCCAGCGCGAAGTCGTGCAGGCGCTGATGGCCGTGCT GCCGACCCATTGCCTGCTGCATCGCGACGAGGACACGGCCGCGTACGAATGCGATGCGCTGTCCGCATACCGCCGGCTGC CGCTCGCGGTGGCGCTGCCGGAGACCGAATCGCAGGTGCAGCGGATCGTGCAGATCTGCCGGCGCATGAACGTGCCGATC GTGCCGCGCGGCGCGGGCACGAGCCTGTCGGGCGGCGCGCTGCCGATCGGGCACGGCGTCGTGCTGTCGCTCGCGCGCTT CACGCGGATCGTCGAAGTCGATTCCTATGCGCGCACGGCCACCGTTCAGCCCGGCGTGCGCAATCTCGCGATCTCCGAGG CCGCCGCGCCGTACGGCCTCTACTACGCGCCCGATCCCTCGTCGCAGATCGCGTGCACGATCGGCGGCAACGTGTCGGAG AACTCGGGCGGCGTTCATTGCCTGAAATACGGGCTCACATGCCATAACGTGCTGCGCGTGCGCGGCGTGACGATCGACGG CGAGATCGTCGAGTTCGGCTCGCTCGCGCCCGACGTGCCGGGCCTCGATCTGCTCACCGTCACGATCGGCAGCGAAGGCA TGTTCATCGTCGTCACCGAGGTGACGGTGCGGCTGATCCCGAAGCCGCAGTGCGCGCAGCTCGTGATGGCGAGCTTCGAC GACGTCGTCAAGGGCGGCGAGGCCGTTGCCGCGATCATCGCGTCGGGCATCATTCCGGCCGGGCTCGAGATGATGGACAA GCCCGCGACGCAGGCGGTCGAGGCGTTCACGCACGCGGGCTACGATCTCGACGCGGCCGCGATCCTGCTGTGCGAATCGG ACGGCACACAGGAGGAAGTCGCCGAGGAGATCGTGCGGATGACCGCGGTGCTGCGCGAGCACGGCGCGACGCGCATCCAG GTCTCGCGCAGCGAGGCCGAGCGGCTGCGCTTCTGGTCGGGCCGCAAGAACGCGTTCCCGGCCGCGGGCCGCATTTCGCC CGACTATTACTGCATGGACGGCACGGTGCCGCGCCGCGCGATCGGGCCGCTCCTCGCGCGCATCGAGCAGATGGAGACGA AGTACGGGCTGCGCTGCATCAACGTGTTCCACGCGGGCGACGGCAACATGCACCCGCTCATCCTGTTCAACGCGAACGAC GTCGACGAGCTGCACCGCGCGGAGGCGTTCGGCGCGGACATCCTCGAGACCTGCGTCGAATTCGGCGGCACGGTGACGGG CGAGCACGGCGTCGGCGTCGAGAAGCTGAACTCGATGTGCGTGCAGTTCTCGCGCGAGGAGTGCGATGCGTTCTTCGCGG TCAAGCGCGCGTTCGATCCGCCCGAGCTGCTGAATCCGGACAAGGGCATTCCGACCCGCGCGCGCTGCGCCGAATACGGC CGGATGCACGTGCGCGGCGGGCTGCTGCCGCATCCGGACCTGCCGCGCTTTTGA Protein sequence : MNAPAELSADLRAQRQREVVQALMAVLPTHCLLHRDEDTAAYECDALSAYRRLPLAVALPETESQVQRIVQICRRMNVPI VPRGAGTSLSGGALPIGHGVVLSLARFTRIVEVDSYARTATVQPGVRNLAISEAAAPYGLYYAPDPSSQIACTIGGNVSE NSGGVHCLKYGLTCHNVLRVRGVTIDGEIVEFGSLAPDVPGLDLLTVTIGSEGMFIVVTEVTVRLIPKPQCAQLVMASFD DVVKGGEAVAAIIASGIIPAGLEMMDKPATQAVEAFTHAGYDLDAAAILLCESDGTQEEVAEEIVRMTAVLREHGATRIQ VSRSEAERLRFWSGRKNAFPAAGRISPDYYCMDGTVPRRAIGPLLARIEQMETKYGLRCINVFHAGDGNMHPLILFNAND VDELHRAEAFGADILETCVEFGGTVTGEHGVGVEKLNSMCVQFSREECDAFFAVKRAFDPPELLNPDKGIPTRARCAEYG RMHVRGGLLPHPDLPRF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| glcD | CAE85245.1 | GlcD protein | Not tested | PAI V 536 | Protein | 2e-128 | 59 |
