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Name : clpB (HDEF_0488) Accession : YP_002923390.1 Strain : Candidatus Hamiltonella defensa T5A Genome accession: NC_012751 Putative virulence/resistance : Virulence Product : ATP-dependent protease, Hsp 100 Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 490036 - 492609 bp Length : 2574 bp Strand : + Note : part of multi-chaperone system with DnaK, DnaJ, and GrpE; COG0542 DNA sequence : ATGAATTTGGATAATTTTACCAATCAGTTTCAATCCGCTTTTTCGGAGGCGCAATCTTTAGCACTGGGTAAGAATCAGCA GTTTATTGAGCCTGTGCACATGATGAAAGCCTTGCTAAATCAAGACACTGGAACGGTTCGGCCATTGCTGGTCGCAACAG GTGTTGATATCAACCGGTTAAATGCAGAGCTTGATAAAGCCTTATCCGATTTACCTGTTGTCGAAGGCATCGGGGGTGAT GTGCGATTATCGAATGCTTCTATACGCATCTTGAATATTTGTAACAAGTTGGCTCAACAAAGAGGAGATAAATATATTTC CTCAGAATGGTTTATTCTTGCTGCCCTCCAAGAGCGAGGGGCTTTAAAGGAAATTATGAAATCTTGTGGGATTTCAGAAC AACCCGTGAAACAAGAAATTGAGCGCTTACGCTCAGGGGATAACGTCAATGATCAAGGTGCCGAAGATCATCGCCAGGCT TTAAAAAAATTTACGATTGACCTCACTGAGCGGGCAGAACAAAGCAAGCTGGATCCGGTGATTGGTCGGGATGAAGAAAT TCGTCGGGCCATTCAGGTTTTACAACGGCGTACAAAAAATAATCCCGTGTTGATAGGCGCGCCTGGTGTCGGGAAAACCG CCATAGTAGAAGGGTTGGCCCAGAGGATCGTCAATGGAGAAGTGCCCGAAGGGCTCAAAAAAAAGCGAGTATTGTCGCTT GATATGGGGGCATTATTGGCAGGGGCGAAATATCGGGGGGAGTTTGAAGAACGGCTCAAGGGTGTGCTTAAAGATTTATC GAAACAAGGGGGAAGCGTGATTTTGTTTATCGATGAATTGCACACTATGGTTGGGGCGGGTAAAGCAGAAGGCGCGATGG ATGCAGGCAATATGTTAAAACCCGCTTTGGCAAGAGGAGAATTACATTGTGTTGGGGCAACAACCTTAGACGAATATCGG CAATATATCGAAAAAGATCCGGCCCTAGAGCGCCGCTTTCAAAAAGTGTATGTGGCTGAGCCGACGGTAGAAGACACGAT TGCCATTTTGCGAGGTCTGAAAGAGCGTTATGAATTACATCATCATGTCCAGATTACCGATCCTGCGATTGTGGCCGCTG CGAGCTTGTCTCAACGCTATATCGCAGATCGTCAATTACCGGATAAAGCCATCGATTTGATTGATGAAGCGGCGGCAAGC ATTCGTATGCAAATAGATTCAAAACCTGAAGCATTGGATAAATTAGAGCGTCGTATTATTCAATTAAAACTGGAACAGCA AGCACTAAATAAAGAGCAGGATGAAGCCAGTAAAAAACGACTCAAAATGCTTAATGATGAACTAGAAAAAAAAGAACGAC AATATTCTGAACTGGAAGAAGAATGGAAGGCTGAAAAAGCCTCTTTGACGGGAACTCAAAATATTAAGGCACAACTCGAA GAAGCAAAAATTACACTGGAGCAAGCGAGACGGGTGTCAGATTTAGCAAAAATGTCGGAGATGCAATATGGCAAAATCCC CGCCCTGGAGAAGCAGTTGCAGGCGGCGACCGAGAAAGAAATGAGTAGCATGAAATTATTACGCAATCGAGTGACCGATA TTGAAATTGCCGAGGTGCTGGCACGTTGGACAGGGATCCCCGTTGATCGAATGTTAGAAAGCGAGCGTGAAAAATTATTA AGGATGGAAGAAAATTTACATCAACAGGTGATAGGCCAAAATGAAGCGGTCATTGCGGTGTCGAATGCGTTACGACGTAG TCGGGCGGGTTTATCGGATCCTAACCGTCCGATCGGTTCGTTTTTATTTTTGGGCCCGACGGGCGTAGGGAAAACAGAAC TATGCAAAGCGTTAGCGTATTTTTTATTTTCCAGCAAAGACGCCATGGTGCGTATCGATATGTCGGAATTTATGGAAAAA CACACGGTATCGCGCTTGTTGGGTGCACCCCCAGGATATGTGGGATATGAACAAGGGGGGTATTTAACCGAAGCCGTTCG TCGCCGCCCTTATTCTGTAGTATTGCTCGATGAAGTAGAGAAAGCCCATCAGGACGTGTTTAATATTTTATTACAAGTAT TAGATGATGGACGATTAACAGATGGTCAAGGTAGAACAGTCGATTTTAGAAACACGGTCATCATCATGACTTCAAATCTA GGCTCCGATCTGATTCAGGAACGCTTTTCTCAAGCCGATTATAGCGACATGAAAAAATCGGTGATGGAGGTGGTCCGGCG TTACTTTCGTCCTGAATTTATTAACAGGATTGATGAAGTCGTGGTATTTCATCCATTAGAAGCACAGCATCTTGAGTCTA TCGCGCAAATTCAGCTCAAGCAGTTATATCAACGCCTCGAAGAAAAAGGCTACACAGCGGGAATCACTCCAAGCGCTTTG GGCTTTTTAACAAAAGAAGGATACGACCCTGTTTATGGTGCCCGACCTTTAAAACGTGCTATTCAACAAGAAATTGAAAA TCCTTTGGCACAGCAAATATTATCAGGCCAGTTAATACCTGGTATGCCTATTGTTTTAGATCTGAATGAAGGACACATCC TTGCAAGGCAGTAA Protein sequence : MNLDNFTNQFQSAFSEAQSLALGKNQQFIEPVHMMKALLNQDTGTVRPLLVATGVDINRLNAELDKALSDLPVVEGIGGD VRLSNASIRILNICNKLAQQRGDKYISSEWFILAALQERGALKEIMKSCGISEQPVKQEIERLRSGDNVNDQGAEDHRQA LKKFTIDLTERAEQSKLDPVIGRDEEIRRAIQVLQRRTKNNPVLIGAPGVGKTAIVEGLAQRIVNGEVPEGLKKKRVLSL DMGALLAGAKYRGEFEERLKGVLKDLSKQGGSVILFIDELHTMVGAGKAEGAMDAGNMLKPALARGELHCVGATTLDEYR QYIEKDPALERRFQKVYVAEPTVEDTIAILRGLKERYELHHHVQITDPAIVAAASLSQRYIADRQLPDKAIDLIDEAAAS IRMQIDSKPEALDKLERRIIQLKLEQQALNKEQDEASKKRLKMLNDELEKKERQYSELEEEWKAEKASLTGTQNIKAQLE EAKITLEQARRVSDLAKMSEMQYGKIPALEKQLQAATEKEMSSMKLLRNRVTDIEIAEVLARWTGIPVDRMLESEREKLL RMEENLHQQVIGQNEAVIAVSNALRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALAYFLFSSKDAMVRIDMSEFMEK HTVSRLLGAPPGYVGYEQGGYLTEAVRRRPYSVVLLDEVEKAHQDVFNILLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL GSDLIQERFSQADYSDMKKSVMEVVRRYFRPEFINRIDEVVVFHPLEAQHLESIAQIQLKQLYQRLEEKGYTAGITPSAL GFLTKEGYDPVYGARPLKRAIQQEIENPLAQQILSGQLIPGMPIVLDLNEGHILARQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 2e-107 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | YP_002923390.1 | ATP-dependent protease, Hsp 100 | VFG0079 | Protein | 1e-158 | 44 |
| clpB | YP_002923390.1 | ATP-dependent protease, Hsp 100 | VFG2076 | Protein | 1e-115 | 41 |
