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Name : secD (HDEF_0083) Accession : YP_002923006.1 Strain : Candidatus Hamiltonella defensa T5A Genome accession: NC_012751 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 84449 - 86302 bp Length : 1854 bp Strand : - Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : GTGCTAAATCGTTATCCGTTGTGGAAGTACGTGATGTTGATTTTTGTCATCTTGCTGTCTTTTCTATATGCATTACCTAA TTTCTACGGTGAAGATCCTGCAGTTCAGATTACAGGCGTTAGAGGGAATGCCGCAAGTGAATTAACATTAAATCAAGTAC ATGATATTTTAAAAAAAAATCATCTTACCAGCCAATCTATAGCATTAAAAAATGGCACTATTCTGGTGCGTTTTAAAGAT CCTAATGTTCAGTTAGCCGCACGTGATGTATTGATTTCAATCTTGGGCGATAGCTACGTGGTAGCTCTTAATTTAGCACC AGCAACACCAATTTGGCTCAGAGCTTTAGGCGCAGATCCCATGAAATTGGGGCTGGATCTCCGTGGGGGCGTTCATTTTT TGATGGAAGTCGATATGGATGCAATCCTAAGTAAACTGCAAATACAAAATATGGATAGCTTGCGCAGGGAACTGCAAGAA AAAAATATCACTTATACACAGATAACGAAGCAAAATAGTACCCATGGTTATGGGATCGAAATTGACTTTTCTGACGCTAA ATCACGTGATGAAGCGATGTCTTATCTTTCTTCCAGACAGAAGCATATGCTGATCAATGCTGATAGAGGTAACAAATTAA AAGCGTTGATGACATCGGATCGTTTACGTGAAGTACGTGAATATGCTGTTCAACAAAACATGACTATTTTACGTAATAGA GTCAATCAAATCGGAGTCGCAGAGCCTCTGGTTCAAAGACAAGGAGATCGGATTGTAGTCGAATTACCCGGTATTCAAGA TACTGCTCGAGCTAAAGAAATATTAGGCGCAACAGCCAGTCTGGAATTCCACCTAGTCAATACCAAAGTGACTCCTGAAG CTGCAGCAATCGGAAGAGTGCCTGCAGATACTGAAATTAAAAAAGACAGAGATGGGCGTCTTGTTGCTTTATACAAAAAA GTGATTATGACTGGAGATCATATTACAGATGCTTTTTTTGGCATTGATGAATATAACCGCCCTCAGGTCAATATTTCTCT TGACAGTTTAGGCAGTGCCATTATGTCCGACTTTACGAAAGATAACATTGGCAAATTGATGGCAAGTTTATATGTAGAGT ACAAAGACAGTGGTAATAAAGATATCAATGGAAGACCTATTTTGGTCAAACAGGAAGAAGTGATTAACGCCGCTAACATC AGCTCACGTTTTGGAGGGCGTTTTCAGATCACAGGAATTGGGACACCGTCAGAAGCGCGCCAATTGGCTTTACTCTTGCG TGCAGGTGCTTTGATTGCTCCTATTCAAATAGTAGAAGAGCGCACTATTGGCCCAACTTTAGGGGCACAAAATATTTCAC AAGGCCTAGATGCCTGTTTGGCCGGTTTGGCCGCTTCCATTTTGTTTATGGTGGTTTACTACCGCAAATTTGGCATGATT GCAAGCACTGCCTTGCTTGTTAATTTAGTATTGATTGTGGGTGTGATGTCTTTATTACCTGGCGTCACGCTTACAATGCC GGGTATAGCAGGGATTGTTTTAACATTAGCCGTTGCGGTAGATGCCAACGTGCTCATTAATGAAAGAATCAAAGAAGAGC TGAGAAATGCACGTTCGATTCAACAAGCCATACATGAAGGTTATAAAGGCGCTTTTTCCAGTATTATTGATGCCAATATT ACTACTCTGATCACGGCTATTATTCTCTATGCTGTAGGAACGGGATCGATTAAAGGATTTGCGATTACGACAATCATTGG CGTGCTCACATCCATGTTTACGGCAATATTAGGAACTCGCGCCATCGTCAACATGCTTTATGGTGCTAAGCGTATAGAGA AATTGTCTATCTGA Protein sequence : MLNRYPLWKYVMLIFVILLSFLYALPNFYGEDPAVQITGVRGNAASELTLNQVHDILKKNHLTSQSIALKNGTILVRFKD PNVQLAARDVLISILGDSYVVALNLAPATPIWLRALGADPMKLGLDLRGGVHFLMEVDMDAILSKLQIQNMDSLRRELQE KNITYTQITKQNSTHGYGIEIDFSDAKSRDEAMSYLSSRQKHMLINADRGNKLKALMTSDRLREVREYAVQQNMTILRNR VNQIGVAEPLVQRQGDRIVVELPGIQDTARAKEILGATASLEFHLVNTKVTPEAAAIGRVPADTEIKKDRDGRLVALYKK VIMTGDHITDAFFGIDEYNRPQVNISLDSLGSAIMSDFTKDNIGKLMASLYVEYKDSGNKDINGRPILVKQEEVINAANI SSRFGGRFQITGIGTPSEARQLALLLRAGALIAPIQIVEERTIGPTLGAQNISQGLDACLAGLAASILFMVVYYRKFGMI ASTALLVNLVLIVGVMSLLPGVTLTMPGIAGIVLTLAVAVDANVLINERIKEELRNARSIQQAIHEGYKGAFSSIIDANI TTLITAIILYAVGTGSIKGFAITTIIGVLTSMFTAILGTRAIVNMLYGAKRIEKLSI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 2e-107 | 46 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 2e-107 | 46 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 2e-107 | 46 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 2e-107 | 46 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 2e-107 | 46 |
