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Name : NT01EI_0174 (NT01EI_0174) Accession : YP_002931656.1 Strain : Edwardsiella ictaluri 93-146 Genome accession: NC_012779 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase, beta subunit, putative Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 168993 - 173021 bp Length : 4029 bp Strand : + Note : - DNA sequence : ATGGTTTACTCCTATACCGAGAAAAAACGTATTCGTAAGGACTTTGGTAAGCGTCCCCAAGTGCTGGACGTACCATACCT CCTTTCTATCCAGCTTGACTCGTTCCAGAAGTTTATCGAGCAAGATCCGGAAGGTCAGTACGGTCTGGAAGCGGCTTTCC GCTCCGTATTCCCGATCCAGAGCTACAGCGGCAACTCCGAGCTGCAGTATGTCAGCTATCGCCTAGGTGAGCCGGTATTT GATGTCAAAGAGTGTCAGATCCGCGGCGTAACCTATTCTGCTCCGCTGCGCGTTAAGTTGCGTCTGGTGATCTACGAGCG TGAGGCGCCGGAAGGCACCGTTAAAGACATCAAAGAACAAGAAGTTTACATGGGTGAAATCCCGCTGATGACCGAAAATG GTACTTTCGTCATCAACGGCACCGAGCGTGTTATCGTGTCTCAGCTGCACCGCAGCCCGGGCGTATTTTTCGACAGCGAC AAGGGTAAAACCCACTCTTCAGGTAAGGTGCTGTATAACGCACGCATCATTCCTTACCGCGGTTCCTGGCTGGACTTTGA GTTCGACCCGAAAGACAACCTGTTTGTCCGTATTGACCGTCGGCGTAAGCTGCCGGCTACCATCATCCTGCGCGCGCTGG ATTTCACTACCGAGCAGATCCTCGATCTGTTCTTCGATAAGGTGATCTTTGAAATCCGCGACAATAAGCTGCAGATGGAG CTGGTGCCGGAGCGTCTGCGCGGTGAGACCGCCTCTTTTGATATCGAGGCCAACGGTAAGGTCTACGTTGAGAAAGGCCG CCGTATTACTGCCCGCCATATCCGTCAGCTGGAAAAAGATGACGTTACGCTGATCGAAGTACCGGTTGAGTATATTGTCG GTAAAGTGGCTGCCAAAGATTACATCGACGAGAGCACCGGTGAGCTGATTTGTGCCGCCAACATGGAGCTGTCGCTGGAT CTGCTGGCCAAGCTGAGCCAGTCTGGTTACAAGCGTATCGACACGCTGTTCACCAACGACCTGGATCACGGCCCGTATAT GTCCGAGACCCTGCGCGTCGATCCGACCAACGATCGTCTGAGCGCGCTGGTAGAAATCTACCGCATGATGCGCCCGGGCG AGCCGCCAACCCGCGAAGCCGCCGAGAATCTGTTCGAGAACCTGTTCTTCTCCGAGGATCGCTACGATCTCTCTGCGGTT GGCCGCATGAAGTTCAACCGTTCTCTGATGCGCGATGAGATCGAAGGTTCCGGTATCCTGAGCAAAAACGACATCATCGA GGTGATGAAGAAGCTCATTGATATCCGTAACGGTAAAGGCGAAGTCGACGATATCGACCACTTGGGCAACCGTCGTATCC GCTCTGTGGGTGAGATGGCGGAAAACCAATTCCGTGTGGGTCTGGTACGTGTTGAGCGTGCGGTGAAAGAGCGTCTGTCC CTGGGCGATCTGGATATGCTGATGCCGCAGGATATGATCAACGCCAAGCCGATTTCGGCGGCGGTGAAAGAGTTCTTTGG CTCCAGCCAGCTGTCCCAGTTTATGGACCAGAACAACCCGCTGTCCGAGATCACTCACAAGCGTCGTATCTCCGCGTTGG GCCCAGGCGGTCTGACCCGTGAGCGTGCCGGCTTTGAAGTGCGAGACGTACACCCGACCCACTACGGTCGCGTATGTCCT ATCGAAACGCCGGAAGGTCCGAACATCGGTCTGATCAACTCCCTGTCTGTGTACGCACAGACCAACGAGTATGGTTTCCT GGAAACTCCGTATCGCCGCGTGCGTGACGGTATCGTGACCGACGAGATCCATTACCTGTCTGCCATCGAAGAAGGCAACT TCGTTATCGCCCAGGCGAACTCCAACCTGGATGATGAAGGCCGCTTTGTAGAAGATCTGGTTACCTGTCGCAGCAAGGGC GAATCCAGCCTGTTCAGCCGTGACCAGGTCGACTACATGGACGTTTCCACCCAGCAGGTGGTTTCCGTCGGTGCGTCCCT GATTCCGTTCCTGGAACACGATGATGCCAACCGTGCCCTGATGGGTGCGAACATGCAGCGTCAGGCCGTGCCGACCCTGC GCGCCGATAAGCCGCTGGTTGGTACCGGTATGGAGCGCGCCGTTGCGGTTGACTCCGGTGTAACCTCCGTTGCCAAGCGC GGCGGTATGGTGCAGTACGTGGATGCGTCCCGTATCGTCATCAAGGTTAACGAAGATGAGATGTTCCCGGGCGAAGCTGG CATCGACATCTACAACCTGACCAAGTACACCCGTTCCAACCAGAACACCTGTATCAGCCAGATGCCGTGTGTCTCGCTGG GTGAGCCGATTGAGCGCGGCGACGTGTTGGCCGACGGCCCGTCCACCGATCTGGGTGAGCTGGCGCTGGGTCAGAACATG CGCGTGGCGTTCATGCCGTGGAACGGCTACAACTTCGAAGACTCCATCTTGGTCTCCGAGCGCGTGGTACAGGAAGATCG CTTTACCTCTATCCATATTCAGGAGCTGGCCTGTGTGTCCCGTGACACCAAGCTGGGGCCGGAAGAGATCACCGCCGATA TCCCGAACGTCGGTGAAGCGGCGCTCTCCAAGCTCGATGAATCCGGTATTGTGTATATCGGCGCCGAAGTGAAGGGTGGC GACATCCTGGTCGGTAAGGTAACGCCGAAAGGTGAAACCCAGCTGACGCCGGAAGAGAAGCTGCTGCGCGCCATCTTCGG TGAGAAGGCGTCTGACGTGAAAGACTCTTCTCTGCGTGTGCCGAACAGCGTTTCCGGTACCGTTATCGACGTACAGGTCT TTACCCGCGATGGCGTGGAAAAAGACAAGCGTGCGCTGGAAATCGAAGAGATGCAGCTCAAGCAGGCCAAGAAAGACCTG ACCGAAGAGTTGCAGATCCTGGAAGCCGGTCTGTTTGCCCGTATCCACGACGTGCTGGTTGCCGGTGGCGTGGAAGCGGA AAAACTGGAAAAACTGCCGCGTGACCGTTGGCTGGAGCTGGGCCTGGCCGATGAAGCCAAGCAGAACCAGCTGGAGCAGC TGGCCGAGCAGTACGATGAGCTGAAGGCTGAGTTCGAGAAGAAACTGGAAGCCAAGCGTCGTAAGATCACCCAGGGCGAC GATCTGGCACCGGGCGTGCTGAAGATCGTTAAGGTGTACCTGGCGGTGAAACGTCAGATCCAGCCGGGCGATAAGATGGC TGGTCGTCACGGTAACAAGGGTGTTATCTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAGAACGGCACGCCGG TCGATATCGTACTGAACCCGCTGGGCGTACCGTCACGTATGAACATCGGTCAGATCCTGGAAACCCACCTGGGTATGGCG GCGAAAGGCATCGGCGACAAGATCAACGCCATGCTCAAGCAGCAGCAGGAAGTGGCCAAACTGCGTGAGTTCATCCAGAG AGCCTACGATCTGGGTGACAACACCCGTCAGCAGGTGGATCTGAACACCTTTAGCGATGACGAAGTTCTGCGTCTGGCGG AAAACCTGAAGAAGGGTCTGCCGGTTGCAACGCCAGTGTTCGACGGTGCTAAAGAGCGCGAAATCAAGGGCCTGCTGGAG CTGGGTGGTATCCCGACCTCTGGCCAGATCACCCTGTATGATGGCCGCACCGGTGAGCGTTTCGAGCGTCAGGTAACCGT GGGTTACATGTACATGCTGAAACTGAACCACTTGGTCGACGACAAGATGCATGCGCGTTCCACCGGCTCCTACAGCCTGG TTACCCAGCAGCCGCTGGGTGGTAAGGCGCAGTTCGGTGGTCAGCGCTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCT TACGGCGCCGCCTACACCCTGCAGGAAATGCTCACCGTTAAGTCTGATGACGTGAACGGCCGTACCAAGATGTATAAGAA CATCGTGGATGGCAGCCATCAGATGGAACCGGGCATGCCGGAATCCTTCAACGTACTGTTGAAAGAAATCCGCTCGCTGG GCATCAACATCGAGCTGGAAGACGAGTAA Protein sequence : MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVF DVKECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSD KGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALDFTTEQILDLFFDKVIFEIRDNKLQME LVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVTLIEVPVEYIVGKVAAKDYIDESTGELICAANMELSLD LLAKLSQSGYKRIDTLFTNDLDHGPYMSETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAV GRMKFNRSLMRDEIEGSGILSKNDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS LGDLDMLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCP IETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRDGIVTDEIHYLSAIEEGNFVIAQANSNLDDEGRFVEDLVTCRSKG ESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTSVAKR GGMVQYVDASRIVIKVNEDEMFPGEAGIDIYNLTKYTRSNQNTCISQMPCVSLGEPIERGDVLADGPSTDLGELALGQNM RVAFMPWNGYNFEDSILVSERVVQEDRFTSIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVKGG DILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNSVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL TEELQILEAGLFARIHDVLVAGGVEAEKLEKLPRDRWLELGLADEAKQNQLEQLAEQYDELKAEFEKKLEAKRRKITQGD DLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMA AKGIGDKINAMLKQQQEVAKLREFIQRAYDLGDNTRQQVDLNTFSDDEVLRLAENLKKGLPVATPVFDGAKEREIKGLLE LGGIPTSGQITLYDGRTGERFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEA YGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGSHQMEPGMPESFNVLLKEIRSLGINIELEDE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 71 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 71 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| NT01EI_0174 | YP_002931656.1 | DNA-directed RNA polymerase, beta subunit, putative | CP001138.1.gene4362. | Protein | 0.0 | 96 |
| NT01EI_0174 | YP_002931656.1 | DNA-directed RNA polymerase, beta subunit, putative | CP000034.1.gene3741. | Protein | 0.0 | 96 |
| NT01EI_0174 | YP_002931656.1 | DNA-directed RNA polymerase, beta subunit, putative | CP001918.1.gene250.p | Protein | 0.0 | 96 |
| NT01EI_0174 | YP_002931656.1 | DNA-directed RNA polymerase, beta subunit, putative | NC_002695.1.914942.p | Protein | 0.0 | 96 |
| NT01EI_0174 | YP_002931656.1 | DNA-directed RNA polymerase, beta subunit, putative | CP000647.1.gene4402. | Protein | 0.0 | 96 |
| NT01EI_0174 | YP_002931656.1 | DNA-directed RNA polymerase, beta subunit, putative | CP004022.1.gene2794. | Protein | 0.0 | 93 |
| NT01EI_0174 | YP_002931656.1 | DNA-directed RNA polymerase, beta subunit, putative | NC_002516.2.881699.p | Protein | 0.0 | 73 |
| NT01EI_0174 | YP_002931656.1 | DNA-directed RNA polymerase, beta subunit, putative | NC_010400.5987325.p0 | Protein | 0.0 | 71 |
| NT01EI_0174 | YP_002931656.1 | DNA-directed RNA polymerase, beta subunit, putative | NC_010611.6233925.p0 | Protein | 0.0 | 71 |
| NT01EI_0174 | YP_002931656.1 | DNA-directed RNA polymerase, beta subunit, putative | NC_011595.7060572.p0 | Protein | 0.0 | 71 |
| NT01EI_0174 | YP_002931656.1 | DNA-directed RNA polymerase, beta subunit, putative | NC_010410.6003841.p0 | Protein | 0.0 | 71 |
| NT01EI_0174 | YP_002931656.1 | DNA-directed RNA polymerase, beta subunit, putative | NC_011586.7046027.p0 | Protein | 0.0 | 71 |
| NT01EI_0174 | YP_002931656.1 | DNA-directed RNA polymerase, beta subunit, putative | NC_009085.4918494.p0 | Protein | 0.0 | 70 |
| NT01EI_0174 | YP_002931656.1 | DNA-directed RNA polymerase, beta subunit, putative | CP000675.2.gene392.p | Protein | 0.0 | 69 |
| NT01EI_0174 | YP_002931656.1 | DNA-directed RNA polymerase, beta subunit, putative | NC_008702.1.4609796. | Protein | 0.0 | 66 |
| NT01EI_0174 | YP_002931656.1 | DNA-directed RNA polymerase, beta subunit, putative | CP002695.1.gene18.p0 | Protein | 0.0 | 65 |
| NT01EI_0174 | YP_002931656.1 | DNA-directed RNA polymerase, beta subunit, putative | NC_011035.1.6448762. | Protein | 0.0 | 64 |
