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Name : secD (Vapar_5119) Accession : YP_002946987.1 Strain : Genome accession: NC_012791 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 5431133 - 5433016 bp Length : 1884 bp Strand : - Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGAACCGTTATCCGGTCTGGAAGTACGCGATCATCGTGATCGTGCTGCTTGTGGGGTTGATCTATTCCCTGCCGAACTT CTTCGGCGAGGCGCCTGCCGTGCAGGTGTCCGCGGCCAAGTCCACCGTCAAGGTCGACGCGGCCACCCAGAGCCGGGTCG AGGAGGCGCTCAAGGCAGCCGGGCTCGCGCCCGACCTGCTCACGCTCGAGGGCGGCTCGCTGCGCGCGCGCTTCGCCACG CCCGACGAGCAGCTCAAGGCGCGCGACACGCTGCAGCGCACGCTGGTGCCCGATCCGGCCGATCCGCCCTACGTGGTGGC GCTGAACCTGGTCTCGCGCTCGCCGGCCTGGCTCACGGCGCTGCATGCGTTCCCGATGTACCTGGGCCTGGACCTGCGCG GCGGCGTCGACTTCCTGCTGCAGGTCGACATGAAGGGCGCCATCGACAAGAAGGCCGAATCCTTCGCGAGCGACCTGCGC ACCACCTTCCGCGACAAGGGCATCCGCGGCACCTCGGTGAACCGCAACGGCCAGGCCATCGAGGTCTCGTTCCGCGACGC GGCCGCGCTCGAAGCGGCCAAGCGCCTGATCCAGGACCAGTTCCAGGACCTCGCCACCACCGACAGCCAGGACGGCAGCA ACTGGCGCCTGGTGGCCACCATCAAGCCCGAAGCCGCGCGCCGGCTGCAGGACGCGGCGCTCAAGCAGAACATCACCACG CTGCACAACCGGATCAACGAACTCGGCGTGGCCGAGCCGGTGATCCAGCAGCAGGGCCTGGACCGCATCGTGGTGCAGCT GCCCGGCGTGCAGGACACGGCCAAGGCCAAGGACATCCTGGGGCGCACCGCCACGCTCGAGATGCGCCTGGTCGACGAAA GCGCCGAAGGCCGCGCGGCCGAACTGAGCGGCGGGCCGGTGCCCTTCGGCTCCGAGAAATTCCTCGAGCGCAACGGCCGC CCCGTGATCGTGAAGAAGCAGGTGCTGGTCACCGGCGAGAACCTCACCGACGCGCAGCCCGGCTTCGACCAGCAGAGCAA CCAGCCCAAGGTCGACCTGACCATGGACGCCAAGGGCGGCCGCATCATGCGCGACGTGAGCCGCGAGAACTACAAGAAGC GCATGGCCATGCTGATCTTCGAGAAGGGCAAGGGCGAAGTGCTCACGGCTCCGTCGATCAACGGCGAACTCGGCAACCGC TTCCAGATTTCCGGCTCGATGACCGTGGCCGAGGCCGCCGACCTCGCGCTGCTGCTGCGCGCCGGCTCGCTGGCCGCGCC GATGGAGATCATCCAGGAACGCACCATCGGCCCGAGCCTGGGCGCCGACAACATCGAGAAGGGCTTCAAGAGCGTGATGT ATGGCTTCTTGGCCATCATGGTGTTCATGTGCGCCTACTACGCGCTGTTCGGCCTGTTCTCGTCGATCGCGCTGGCCGTC AACCTGATGCTGCTGGTGGCCATTCTCTCGATGCTGCAGGCTACGCTCACGCTGCCCGGCATCGCGGCCATGGCGCTGGC CATCGGCGTGGCCATCGACTCCAACGTGCTGATCAACGAGCGCGTGCGCGAGGAGCTGCGCAACGGCGCCTCGCCGCAGG CGGCCATCCACGCCGGCTACGACCGCGCCTGGGGCACGATCCTCGACTCCAACGTGACCACGCTGATCGCGGGCATCGCG CTGCTGGCCTTCGGCTCGGGCCCGGTGCGCGGCTTCGCGGTGGTGCACTGCATCGGCATCGTCACCTCGATGTTCTCCGC CGTGTTCTTCTCGCGCGGCCTCGTGAACTTCTGGTACGGCCAGAAGAAGAAGCTCAAGACGGTGTCGATCGGCACGGTCT GGCGCCCCAAGACCGACGGCACTGCCGTGGCTGAAGGCAAGTAA Protein sequence : MNRYPVWKYAIIVIVLLVGLIYSLPNFFGEAPAVQVSAAKSTVKVDAATQSRVEEALKAAGLAPDLLTLEGGSLRARFAT PDEQLKARDTLQRTLVPDPADPPYVVALNLVSRSPAWLTALHAFPMYLGLDLRGGVDFLLQVDMKGAIDKKAESFASDLR TTFRDKGIRGTSVNRNGQAIEVSFRDAAALEAAKRLIQDQFQDLATTDSQDGSNWRLVATIKPEAARRLQDAALKQNITT LHNRINELGVAEPVIQQQGLDRIVVQLPGVQDTAKAKDILGRTATLEMRLVDESAEGRAAELSGGPVPFGSEKFLERNGR PVIVKKQVLVTGENLTDAQPGFDQQSNQPKVDLTMDAKGGRIMRDVSRENYKKRMAMLIFEKGKGEVLTAPSINGELGNR FQISGSMTVAEAADLALLLRAGSLAAPMEIIQERTIGPSLGADNIEKGFKSVMYGFLAIMVFMCAYYALFGLFSSIALAV NLMLLVAILSMLQATLTLPGIAAMALAIGVAIDSNVLINERVREELRNGASPQAAIHAGYDRAWGTILDSNVTTLIAGIA LLAFGSGPVRGFAVVHCIGIVTSMFSAVFFSRGLVNFWYGQKKKLKTVSIGTVWRPKTDGTAVAEGK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 1e-94 | 41 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 6e-95 | 41 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 2e-94 | 41 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 1e-94 | 41 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 1e-94 | 41 |
