Gene Information

Name : Rpic12D_1674 (Rpic12D_1674)
Accession : YP_002981629.1
Strain :
Genome accession: NC_012856
Putative virulence/resistance : Unknown
Product : type VI secretion system OmpA/MotB family protein
Function : -
COG functional category : S : Function unknown
COG ID : COG3455
EC number : -
Position : 1779735 - 1780982 bp
Length : 1248 bp
Strand : -
Note : TIGRFAM: type VI secretion system OmpA/MotB family protein; type IV / VI secretion system protein, DotU family; PFAM: OmpA/MotB domain protein; KEGG: reh:H16_A0662 outer membrane protein

DNA sequence :
ATGCAAGAGCCAGCAGCGCAGCCTAGCCCCGAGCCGGTACGCTCTGCCTCCACCCGAGCTGCCAACGAACCACGACAGAT
CAAGCGCAAGCCGATCGAGCAACGTGTCGAGAAAGCCAAGCAGGCAGTCAACCCGGTACTGTCCGCCGCGCGGCCCTTGC
TGCGCGCCCTGGCGGATATGCCGAGCACACTGCGCGTCGATCAGGCCGCGCTTCTGAAAGACGTGCTTGAACAAGAGCTG
CACGACTTCCAGACCGTCTGCGAACGGGTGGGCATTCGGTCCGAGCACACCCTTGCCGCACACTACAGCCTGTGCACCGC
CTTGGATGAAGCGGCTTTAGGCACACCATGGGGCAGCAATGGTTCCTGGGCGAAGGACAGCCTGCTCGTCAAACACCATG
GCGGCACTGACGGCGGCACCAAGGTCTTCCAAGTGCTCGGCCGGCTGGTCAACAGCCCTGAAGAGCACATCGACGTCATC
GAGCTGATCTACTACCTGCTCTCGCTCGATTTCCAGGGCCGCTATCGTGGCCCCGCTGAGGGCGAGCGGCAACACCTGGC
GATTCGGCAGAGCCTGCATACCCTGATCCGCAAGCATCGCGGCGCCGTGCCCAGGGAACTGTCCCCGAATCTGCCCGTGA
TACCGGCAGGGCGCTTCTCCATGATTCGCACCGTCCCGATCTGGTTCAGCGCCACCGTGCTGGGCATGGCCGCCTTCGGC
TTGTTTGGCTGGTACAAGTACCAGCTCTCGCTGCGCACGCACGATCTGGAACAACAGATCCAGGCCATCGGGCAGATCAC
CCCGCCGCCACCGCCAAAGGTGGTCCTGCGTCTGGCCGAACTGCTCAAGGACGAAATCGCTCGTGGCCAGGTCAAGGTGG
AGGAAGATGCCACCCACAGCGCCGTCACCTTCCGTGGCGACGACATGTTTGCCGGCGGTCGCGCGGACGTGAACGCCAAG
GTCCAGCCCCTGCTGGACAAGATCGCCTCGGAAATCACCAAGGTACCCGGCAAGGTAACCGTCACCGGGCACAGTGACAA
CCAGCCCATCAAGACGGCTAAGTTCCCTTCCAACCAGGTGCTCTCGGAAGAGCGTGCCGTGCACGTCTCTGAATACCTCG
CCTCGCGTGGCGTGGCACAGGGCCGGCTCGAAGCCGTGGGCAAGGGCGACACCGAACCCGTGGCCGATAACTCGACTTGG
AATGGCCGGGCAGCGAACCGCCGCGTGCAGATCGACGTCACGCAGTAA

Protein sequence :
MQEPAAQPSPEPVRSASTRAANEPRQIKRKPIEQRVEKAKQAVNPVLSAARPLLRALADMPSTLRVDQAALLKDVLEQEL
HDFQTVCERVGIRSEHTLAAHYSLCTALDEAALGTPWGSNGSWAKDSLLVKHHGGTDGGTKVFQVLGRLVNSPEEHIDVI
ELIYYLLSLDFQGRYRGPAEGERQHLAIRQSLHTLIRKHRGAVPRELSPNLPVIPAGRFSMIRTVPIWFSATVLGMAAFG
LFGWYKYQLSLRTHDLEQQIQAIGQITPPPPPKVVLRLAELLKDEIARGQVKVEEDATHSAVTFRGDDMFAGGRADVNAK
VQPLLDKIASEITKVPGKVTVTGHSDNQPIKTAKFPSNQVLSEERAVHVSEYLASRGVAQGRLEAVGKGDTEPVADNSTW
NGRAANRRVQIDVTQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY0305 NP_454885.1 putative membrane protein Not tested SPI-6 Protein 6e-83 49