Gene Information

Name : Rpic12D_1683 (Rpic12D_1683)
Accession : YP_002981638.1
Strain :
Genome accession: NC_012856
Putative virulence/resistance : Virulence
Product : type VI secretion protein
Function : -
COG functional category : S : Function unknown
COG ID : COG3516
EC number : -
Position : 1790070 - 1790609 bp
Length : 540 bp
Strand : -
Note : TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: conserved hypothetical protein; KEGG: cti:RALTA_A0608 replication/virulence associated protein; DUF770

DNA sequence :

ATGTCTGTTGTGAACAGTTCGCAGAAATTCATCGCGCGCAACCGCGCACCGCGCGTCCAGATCGAGTACGACGTCGAAGT
CTACGGCTCGGAGAAACGGATCGAGTTGCCTTTCGTGATGGGCGTGTTGGCCGACCTGTCCGGGAAGCCGGCTGAGCCGC
TGCCTTCGGTGGCCGATCGCAAGTTCCTCGAAATAGATATCGACAACTTCGACGAGCGCATGAAAGCCATGAAGCCGCGC
GTTGCGTTTGCTGTGCAGAACACGCTCACCGGCGAAGGCCAACTGATGGTCGACATGACCTTCGAGAGCATTGAAGACTT
CTCGCCCGCCGCGGTCGCCGGCAAGGTAGACGCGCTTAAGCAACTGCTCGAAGCCCGGACGCAGCTGGCCAACCTGCAGA
CCTACATGGACGGCAAGTCCGGCGCCGAGTCGCTCATCAACCAACTGCTGCAAGACCCGGCCCTGCTGCAAGCACTGGCC
AAGGCACCGAAGCCCGAGGTGACGCCGGTTCAAGCCGGGACCGAGCAGACCGACGCCTGA

Protein sequence :

MSVVNSSQKFIARNRAPRVQIEYDVEVYGSEKRIELPFVMGVLADLSGKPAEPLPSVADRKFLEIDIDNFDERMKAMKPR
VAFAVQNTLTGEGQLMVDMTFESIEDFSPAAVAGKVDALKQLLEARTQLANLQTYMDGKSGAESLINQLLQDPALLQALA
KAPKPEVTPVQAGTEQTDA

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
STY0297	NP_454879.1	conserved hypothetical protein	Not tested	SPI-6	Protein	4e-57	81

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
Rpic12D_1683	YP_002981638.1	type VI secretion protein	VFG2069	Protein	6e-54	77