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Name : secD (Dd703_2904) Accession : YP_002988501.1 Strain : Dickeya dadantii Ech703 Genome accession: NC_012880 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 3386379 - 3388193 bp Length : 1815 bp Strand : - Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGCTGATCGTGACGATTGTCGTTGGTCTGCTCTACGCACTTCCTAACCTTTATGGTGAGGATCCGGCTGTTCAGGTCAC TGGCGCGCGGGGAACCGCCGCCAGTGAGAGTACGCTGGTCCAGATCCAGAGCGTTTTAAAAGAACAAAATATTTCCAGCA AATCCATTGTGCTGGAAAATGGCGCCATTTTGGCGCGTTTTTCTACTCCTGATATCCAATTGCGGGCACGCGAAGCGCTG CTCAATGCATTGGGCGAGAAATACGTTGTGGCGCTTAACCTTGCGCCGTCAACCCCCCACTGGCTGAGAATGCTCGGTGC GGAACCGATGAAGCTGGGCCTCGACCTGCGCGGCGGCGTACATTTCCTGATGGAAGTGGATATGGAAACCGCGTTGAGCA AATTGCAGGAACAGACCATGGATTCTCTGCGCAGCGATCTGCGTGAGAAAAATGTTCAATACGCCTCTATCCGTAAGTCC GATAACTATGGCGTAGAAATCGTTTTCCGTGATGGCCAACAGCGTGATCAGTCGGTTGATTATCTGACATCCCGTCATCG TGATCTGGTCATTACTTCCAGCGGCAGCGACACGTTGCGTGCGGTGATGAGCGATGCCCGGTTGCGCGAAGCCCGCGAAT ATGCCGTTCAGCAGAACATCAATATCCTGCGTAACCGTGTGAACCAACTGGGCGTGGCCGAACCGCTGGTGCAACGTCAG GGTGCTGACCGCATCGTGGTTGAACTGCCGGGGATTCAGGATACCGCGCGCGCCAAGGAAATTCTGGGTGCCACCGCGAC GCTGGAATTCCGTCTGGTGAACAGCAACGTCGATCCTGCTGCGTTAGCCAGCGGCCGCGTACCCGGCGATACCGAAGTGA AGAACATGCGTGACGGCGGGCCGATAGCGCTGTACAAACGTGTCATTCTGACCGGCGATCATATCACCGACTCCACCTCC GGCAACGATGAGTACAATCGCCCGCAGGTGAATATCTCGCTGGATAGCGCCGGCGGCAATATGATGCTCAACTTCACTAA GGTCAACATCGGCAAGCCGATGGCAACCCTGTTTGTGGAGTATAAGGACAGCGGTAAGAAAGGCGCCAACGGCCGTGCCA TTCTGGAGAAACAGGAAGAGGTGATTAACGTCGCCACAATCCAGTCTCCCTTGGGCAACAGTTTCCGGATTACCGGCATC GACAACCCGAACGAAGCTCGCCAATTGGCGCTGTTGCTGCGTGCCGGTGCATTGATCGCGCCGATTCAGATCGTGGAAGA GCGTACCATCGGCCCAACGCTGGGGATGCAGAATATCACCCAAGGGTTGGAGGCCTGTCTGGCCGGCCTTGCCGTGTCTA TCCTGTTCATGATCTTCTTCTACAAGAAGTTCGGCATGATCGCGACCTCTGCCCTGCTGTCGAACCTGGTGTTGGTGGTC GGCATTATGTCGCTGTTGCCGGGCGCTACGCTGACCATGCCGGGGATTGCGGGGATTGTGTTAACCCTTGCGGTAGCGGT GGATGCCAACGTACTGATTAACGAGCGTATTAAAGAAGAACTGAGTAACGGGCGTACTGTTCAGCAGGCAATTGACGAAG GCTACAAAGGCGCCTTCAGCTCCATCTTCGATGCGAACGTCACGACGCTGATCAAGGTCATTATCCTGTACGCGATCGGT ACTGGTTCGATTAAAGGATTTGCGATTACGACCGGTATCGGCGTGGCGACATCCATGTTCACTGCGATCGTGGGTACCCG TGCCATCGTAAACCTGCTGTACGGCGGCAAACGCATCAAAAAGCTGTCTATCTGA Protein sequence : MLIVTIVVGLLYALPNLYGEDPAVQVTGARGTAASESTLVQIQSVLKEQNISSKSIVLENGAILARFSTPDIQLRAREAL LNALGEKYVVALNLAPSTPHWLRMLGAEPMKLGLDLRGGVHFLMEVDMETALSKLQEQTMDSLRSDLREKNVQYASIRKS DNYGVEIVFRDGQQRDQSVDYLTSRHRDLVITSSGSDTLRAVMSDARLREAREYAVQQNINILRNRVNQLGVAEPLVQRQ GADRIVVELPGIQDTARAKEILGATATLEFRLVNSNVDPAALASGRVPGDTEVKNMRDGGPIALYKRVILTGDHITDSTS GNDEYNRPQVNISLDSAGGNMMLNFTKVNIGKPMATLFVEYKDSGKKGANGRAILEKQEEVINVATIQSPLGNSFRITGI DNPNEARQLALLLRAGALIAPIQIVEERTIGPTLGMQNITQGLEACLAGLAVSILFMIFFYKKFGMIATSALLSNLVLVV GIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYKGAFSSIFDANVTTLIKVIILYAIG TGSIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRIKKLSI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 2e-120 | 48 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 9e-120 | 48 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 6e-120 | 48 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 6e-120 | 48 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 6e-120 | 48 |
