Gene Information

Name : Desal_2073 (Desal_2073)
Accession : YP_002991672.1
Strain : Desulfovibrio salexigens DSM 2638
Genome accession: NC_012881
Putative virulence/resistance : Virulence
Product : type I secretion system ATPase
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG2274
EC number : -
Position : 2274380 - 2276536 bp
Length : 2157 bp
Strand : -
Note : KEGG: hch:HCH_06117 bacteriocin/lantibiotic ABC transporter; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter; peptidase C39 bacteriocin processing; ABC transporter transmembrane protein; SMART: ATPase AAA

DNA sequence :
ATGCAGCACGATACCCAGTCGGCGGCTCTTGACTCAGGTCTGGAGTGCCTTGTTTTTATTGCGCGTTTTCACAATATCCC
GGTTTCCACGGAATCTGTCCGTCATGAACATCCCCCCCGGGGAGAATTCATGGACAGCATTGAAATCTTGCGGGCGGCAA
AATCAATCAAATTAAAAGCCAAGGAAGCCCGCAAAGATTTTGATGAGCTTTCAATACTACCGACCCCGGCAATGTTTCTG
GGCCATGATGGGGTCTGGAAAGTTCTGGGCCGGGTCAGTGATGGTACAGCCCTGATCAGGGATCCCAGAAAAGACAGTGC
GGAACTGGTTAAGGAAGAGGAACTTGAAAAGGACTGGGGTGGGCAGGTTATCATGCTTACCCGTATGGGTATCCTTCCGG
AAGGATTGCGCAAGTTCAATCTTAGCTGGTTTATTCCTTCGATTATCAAGTATAAAAAGCTGTTCGGCGAAGTCTTGCTG
GCCTCATTTTTTCTACAGATTTTTGCTTTGGTTACCCCGTTATTTTTTCAGGTGGTTGTAGATAAGGTGTTGGTTAACAA
AGGGCTGACCACACTTGATGTGCTTGCTGTGGGGCTTCTGATTGTTTCGGTTTTCGAGGTTGTTCTTGGGGGTATGCGCA
CATGGCTTTTTTCGCACACAGCCTACCGGGTGGATGTCATGCTCGGAGCGCGGCTTTTCAATCATATGGTCAAGCTGCCC
ATCGCTTATTTCAATTCCCGGCGGGTGGGTGATTCTGTTGCCCGTGTGCGGGAACTGGAAAGTCTGCGTCGTTTCCTGAC
CGGATCAACGTTGACCCTGATAATCGACCTTTGTTTTACCGTTGTTTTTTTTGTTGCCATGCTTTGCTATTCCCCGCTGC
TGACAGGAGTCGTGGCGGCAATCATTCCGTTGTATGTAATCCTTTCCTTCTGTATCACCCCGATCCTGCGTAAATTTCTG
GAAGATAAGTTCCAGCGCGGAGCTGAGAATCAGGCTTTTCTGGTGGAGACAATATCGGACATTCATACTGTTAAGGCTAT
GGCTGTTGAACCTCAGTTCCAGCGCCGTTGGGAAGATACCATTGCCAATTACGTGCGTTCGGCTTTCCGGGCGGACAATT
TGGGTAACTTTGCTGTTCAGGCTACACAATTTATCAATAAATTAACTACCGTGCTGGTTATCTGGTTCGGTGCGCGGGCC
GTTATTGCCGGAGATATGAGTATCGGGCAGCTTGTGGCTTTCAACATGTTTGCCCAGCGGGTCAGCGGTCCGATCCTGCG
TCTTGCCAAGGTCTGGCAGGATCTTCAGCAGGCCGGGGTTTCCCTTGAGCGGCTTGGGGATATTCTCAACAACCCCACGG
AAGCGGTAAACAATGCCGCAACAAATCCAGGAACCATCAAGGGGCAAATCAGATTTGAGAATGTCAGCTTCAGGTATCGT
CCGGATGGACCATTTATTCTGGATAATATCAACCTGACCGTTAATCCCGGTGAATCCATCGGTATTGTAGGCCGTTCCGG
TTCAGGAAAAAGCACCCTGACCAGCTTGTTGCAACGGTTTTATCCACCTGAAAATGGACGTGTGCTGGTGGATGGTATTG
ATCTCAATCTGGTTGAAGTTTCATGGCTGCGTAGGCAGATCGGGGTGGTCCTGCAGGAAAGTAAGCTATTCAACCGCGAT
GTCCGGGAAAACATTGCCCTGTCCGATCCCGGTGTGGATATGAACCGGGTCATGCATGCCGCAGCCCTCGCCGGGGCGCA
TGATTTTATCCTTGAGTTGGCCGAAGGGTATTCCACCATGGTCGGAGAACAGGGATCGACCCTTTCCGGCGGTCAGCGGC
AGCGAATCGCCATTGCTCGCGCCTTGCTGACCAACCCAAGAATCTTGATTTTGGACGAAGCTACTAGTGCTCTTGATTAC
GAATCTGAACATATTATCCAAAACAATATGAGTGCTATCAGTCAGAATCGCACTGTAATGGTTATTGCGCATCGGCTTTC
CACTATTCGTCTCTGTGATCGAATCATTGTTATGGATAAGGGTAAGATAGTAGAACAAGGAACACATTCGGATCTTATCG
CTCAGAACGGATACTATAGAAAACTCTGGGATTATCAGAATAAGGATATGGGAGGCGGAAGTGAAGAAGCGGCGTAA

Protein sequence :
MQHDTQSAALDSGLECLVFIARFHNIPVSTESVRHEHPPRGEFMDSIEILRAAKSIKLKAKEARKDFDELSILPTPAMFL
GHDGVWKVLGRVSDGTALIRDPRKDSAELVKEEELEKDWGGQVIMLTRMGILPEGLRKFNLSWFIPSIIKYKKLFGEVLL
ASFFLQIFALVTPLFFQVVVDKVLVNKGLTTLDVLAVGLLIVSVFEVVLGGMRTWLFSHTAYRVDVMLGARLFNHMVKLP
IAYFNSRRVGDSVARVRELESLRRFLTGSTLTLIIDLCFTVVFFVAMLCYSPLLTGVVAAIIPLYVILSFCITPILRKFL
EDKFQRGAENQAFLVETISDIHTVKAMAVEPQFQRRWEDTIANYVRSAFRADNLGNFAVQATQFINKLTTVLVIWFGARA
VIAGDMSIGQLVAFNMFAQRVSGPILRLAKVWQDLQQAGVSLERLGDILNNPTEAVNNAATNPGTIKGQIRFENVSFRYR
PDGPFILDNINLTVNPGESIGIVGRSGSGKSTLTSLLQRFYPPENGRVLVDGIDLNLVEVSWLRRQIGVVLQESKLFNRD
VRENIALSDPGVDMNRVMHAAALAGAHDFILELAEGYSTMVGEQGSTLSGGQRQRIAIARALLTNPRILILDEATSALDY
ESEHIIQNNMSAISQNRTVMVIAHRLSTIRLCDRIIVMDKGKIVEQGTHSDLIAQNGYYRKLWDYQNKDMGGGSEEAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hlyB NP_755448.1 hemolysin B Virulence PAI I CFT073 Protein 1e-174 54
hlyB CAD33760.1 hemolysin B Virulence PAI I 536 Protein 9e-175 53
hlyB CAD42038.1 HlyB protein Virulence PAI II 536 Protein 9e-175 53

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desal_2073 YP_002991672.1 type I secretion system ATPase VFG0841 Protein 9e-168 54
Desal_2073 YP_002991672.1 type I secretion system ATPase VFG0907 Protein 5e-175 54
Desal_2073 YP_002991672.1 type I secretion system ATPase VFG1557 Protein 5e-175 53
Desal_2073 YP_002991672.1 type I secretion system ATPase VFG1501 Protein 5e-175 53
Desal_2073 YP_002991672.1 type I secretion system ATPase VFG1269 Protein 5e-168 52