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Name : secD (Dd1591_3095) Accession : YP_003005396.1 Strain : Dickeya zeae Ech1591 Genome accession: NC_012912 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 3527199 - 3529013 bp Length : 1815 bp Strand : - Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGCTGATCGCGACGATCGTCGTCGGTCTGCTCTACGCACTTCCTAACCTGTATGGTGAGGATCCGGCAATTCAGGTCAC TGGCGCGCGAGGAACCGCCGCCAGTGAATCTACGCTGGTCCAGATCCAGAATGTTTTGAAAGAACAAAATATCGCCAGCA AGTCTATTGCGCTGGAAAACGGCGCTATTCTCGCGCGCTTCTCTACGCCGGATATACAGCTTCATGCTCGTGAAGTGCTG CTGAACGCGCTGGGCGAGAAATATGTGGTGGCGCTCAATCTGGCTCCCGCTACGCCAACCTGGCTGAGAGTGCTGGGGGC GGAGCCGATGAAACTGGGTCTTGACCTGCGTGGCGGTGTTCACTTCCTGATGGAAGTGGATATGGATACCGCATTAGGCA AGTTACAGGAGCAGACGATGGATTCCCTGCGCAGTGAACTGCGCGAGAAAGGCATCCAGTATGCTTCTGTTCGCAAGTCG GATAATTATGGCGTGGAAATCCTGTTCCGCGACAGTCAGCCGCGTGACAACGCGGTGAATTACCTGACCCCTCGCCATCG CGATTTGGTGATCAGCTCTAGCGGCAACGATACGCTGCGTGCGGTGATGAGCGATGTTCGTTTGCGCGAAGCCCGTGAAT ATGCGGTGCAGCAGAACATCAATATCCTGCGCAATCGTGTTAACCAGCTCGGCGTCGCCGAACCGCTGGTACAACGCCAG GGTGCCGACCGTATCGTGGTTGAATTGCCGGGGATTCAGGATACGGCGCGCGCCAAAGAAATCCTGGGCGCGACGGCTAC GCTGGAGTTCCGTCTGGTAAACAGCAATGTTGATCCTGTCGCGATGAGCAACGGGCGTGTGCCGGGCGATACCGAAGTGA TGAATATGCGTGATGGCGGCCCGATAGCCCTGTTCAAACGTGTGATTCTGACCGGCGACCACATTACCGACTCGACTTCC GGCAATGATGAATACAACCGTCCGCAGGTGAATATCTCGCTGGACAGTGCCGGCGGCAACCTGATGTTAAACTTCACCAA GGGCAACGTCGGTAAGCCGATGGCGACCCTGTTTGTGGAGTATAAGGACAGCGGTAAAAAAGACGCTAATGGTCGCGCCA TTCTGGAAAAACAGGAAGAGGTGATTAACGTCGCTACTATCCAGTCTCCTCTGGGTAACAGCTTCCGCATTACCGGCATC AACAATCCGAACGAAGCTCGCCAACTGTCGCTGCTGCTGCGTGCCGGTGCGCTGATAGCGCCGATTCAGATTGTGGAAGA GCGTACCATCGGCCCGACGCTGGGGATGCAAAACATTACCCAAGGTCTGGAAGCCTGTCTGGCTGGCTTAGCGGTGTCGA TTCTGTTCATGATCTTCTTCTACAAGAAGTTCGGCATGATTGCGACATCGGCACTGTTGTTGAACCTGGTGCTGGTTGTC GGGGTGATGTCGTTGCTGCCGGGGGCTACCCTGACCATGCCGGGGATCGCGGGTATCGTGTTAACCCTGGCCGTCGCAGT GGACGCTAACGTACTGATTAACGAGCGTATCAAAGAGGAACTCAGCAACGGACGCTCTGTTCAGCAGGCGATTGACGAAG GCTATCGCGGCGCATTCAGTTCCATCTTCGATGCCAACGTTACGACGCTGATTAAGGTCATTATCCTGTATGCGGTCGGT ACCGGCTCGATCAAAGGATTTGCGATTACGACCGGGATTGGCGTGGCGACATCCATGTTTACCGCGATCGTTGGGACCCG TGCCATCGTAAACCTGTTGTACGGCGGCAAACGCATTAAAAAGCTGTCTATCTGA Protein sequence : MLIATIVVGLLYALPNLYGEDPAIQVTGARGTAASESTLVQIQNVLKEQNIASKSIALENGAILARFSTPDIQLHAREVL LNALGEKYVVALNLAPATPTWLRVLGAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQTMDSLRSELREKGIQYASVRKS DNYGVEILFRDSQPRDNAVNYLTPRHRDLVISSSGNDTLRAVMSDVRLREAREYAVQQNINILRNRVNQLGVAEPLVQRQ GADRIVVELPGIQDTARAKEILGATATLEFRLVNSNVDPVAMSNGRVPGDTEVMNMRDGGPIALFKRVILTGDHITDSTS GNDEYNRPQVNISLDSAGGNLMLNFTKGNVGKPMATLFVEYKDSGKKDANGRAILEKQEEVINVATIQSPLGNSFRITGI NNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNITQGLEACLAGLAVSILFMIFFYKKFGMIATSALLLNLVLVV GVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELSNGRSVQQAIDEGYRGAFSSIFDANVTTLIKVIILYAVG TGSIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRIKKLSI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 1e-114 | 49 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 1e-114 | 49 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 1e-114 | 49 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 1e-114 | 49 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 2e-115 | 49 |
