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Name : secD (NT05HA_1309) Accession : YP_003007753.1 Strain : Aggregatibacter aphrophilus NJ8700 Genome accession: NC_012913 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 1314471 - 1316321 bp Length : 1851 bp Strand : + Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGTTAAATCGTTACCCTTTATGGAAGAATCTAATGGTGATCTTTTTGGTCGCCATTGGTATTTTATATGCTCTTCCAAA CCTTTACGGTGAAGACCCTGCCGTACAAATTTCAGGAACTCGTGGCCAAGAAGCCAATTCCGGCGTCTTAAGCGAAGTTC AAACCGTTCTAAAAGACAATAATCTGGCAACCAAATCCATTGTGTTGGAAAACGGATCTATTCTTGTGCGTTTTAACAAC ACTGATGTGCAATTACTCGCCAAAGATAAAATCACCGAAAAATTGGGCACAAATTATTCTGTCGCCTTAAACCTTGCACC GGCTACACCGGCATGGTTAAGCAGCATTGGTGGCAACCCGATGAAATGGGGTTTGGACCTGCGTGGTGGCGTGCGTTTCT TAATGGAAGTGGATATGAATTCTGCTTTAAGCAAACGTCAGGAACAATTACAGGATTCCTTGCGCACAGAGTTACGTAGA GAAAAATATCAGTACACCGCCATCAAATCGGCAGAAAATTTTGGCACAACCATTACGTTAGCTCGCCCAGAACAACTTTC CGATGTGCAACGTTATTTGCGTCGCCAACACCAAAATTTAGAAGTAAAAGCCATTTCCGATAATACATTATCCCTAGGTT TGTCTGACGTCGCATTAAACGAAGCCCGCGAAAGCGCTATTGAACAAAACTTAAGTATTTTGCGTAAACGTGTGACAGAA CTTGGTGTTGCAGAAGCAGTGATTCAACGCCAAGGTGCAGAACGTATCGTGGTTGAATTACCGGGAGTACAAGACACTGC CCGCGCGAAAGAAATTCTTGGGGCAACTGCAACCCTTGAATTCCGTTTAGTCAATGGCAACGTAAACTTAGAAGCGGCGG CTCGCGGTATGGTCACTTCTGATTCTGAAGTGAAATATGACAGAAACAATCGTCCTATCGTGTTATATAAACGTGCGGTA TTAGGTGGTGAACACATTACTAACGCGAGTTCCGGCGTTGATCAAAATACATCCAGACCACAAGTTAGCGTAACCTTGGA TAGTGAAGGTGGCGAAATTATGTCGCAAACGACGCGTGCCAACATCCAAAAACCGATGGCAACGTTGTACGTTGAATATA AAGACAGCGGCAAAAAAGATGAAAATGGTAAAACCATTTTACAAAAACACGAAGAAGTCATTAACGTTGCAACCATTCAA GGTCGTTTCGGTAGTCAATTCCAAATTACCGGTATTGATTCTCCTGCAGAAGCACAAAATCTTGCCGTGTTACTTCGTTC CGGTGCGTTGATTGCACCGATTCAAATCGTGGAAGAACGCACAATCGGTCCATCCCTTGGTGCGCAAAACGTAGAACAAG GTTTACAAGCAAGTTTCTGGGGCTTAATGATCGTAGTGGCATTTATGGTGATTTACTACCGTAAATTCGGCCTTATCGCC AATGTTGCTTTGATCGCCAACATCGTTTTATTAGTCGGCTTAATGTCGTTATTACCGGGTGCCACGCTCACCATGCCGGG TATTGCCGGTATCGTATTGGCGGTCGGGATGTCTGTGGATGCGAACGTATTAATCTTCGAGCGGATTAAAGAAGAAATCC GCAACGGTCGTCCGGTTCAACAAGCTATTAATGAGGGTTATAGCGGTGCGTTTAGTTCCATCTTCGATGCTAACTTAACC ACCATTTTGACCGCCGTGGCACTTTACGCCGTGGGAACAGGCCCAATTAAAGGTTTCGCAATCACCTTGTCTTTAGGTAT TGCCATTTCAATGTTTACCGCAATCACCGGCACACGGGCAATCGTGAACTTCTTATACGGCGGCAAACGAATTGATAAAT TATCAATTTAA Protein sequence : MLNRYPLWKNLMVIFLVAIGILYALPNLYGEDPAVQISGTRGQEANSGVLSEVQTVLKDNNLATKSIVLENGSILVRFNN TDVQLLAKDKITEKLGTNYSVALNLAPATPAWLSSIGGNPMKWGLDLRGGVRFLMEVDMNSALSKRQEQLQDSLRTELRR EKYQYTAIKSAENFGTTITLARPEQLSDVQRYLRRQHQNLEVKAISDNTLSLGLSDVALNEARESAIEQNLSILRKRVTE LGVAEAVIQRQGAERIVVELPGVQDTARAKEILGATATLEFRLVNGNVNLEAAARGMVTSDSEVKYDRNNRPIVLYKRAV LGGEHITNASSGVDQNTSRPQVSVTLDSEGGEIMSQTTRANIQKPMATLYVEYKDSGKKDENGKTILQKHEEVINVATIQ GRFGSQFQITGIDSPAEAQNLAVLLRSGALIAPIQIVEERTIGPSLGAQNVEQGLQASFWGLMIVVAFMVIYYRKFGLIA NVALIANIVLLVGLMSLLPGATLTMPGIAGIVLAVGMSVDANVLIFERIKEEIRNGRPVQQAINEGYSGAFSSIFDANLT TILTAVALYAVGTGPIKGFAITLSLGIAISMFTAITGTRAIVNFLYGGKRIDKLSI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 1e-123 | 46 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 6e-123 | 46 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 4e-123 | 46 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 4e-123 | 46 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 4e-123 | 46 |
