Gene Information

Name : PC1_0974 (PC1_0974)
Accession : YP_003016560.1
Strain : Pectobacterium carotovorum PC1
Genome accession: NC_012917
Putative virulence/resistance : Virulence
Product : periplasmic binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG4594
EC number : -
Position : 1123163 - 1124077 bp
Length : 915 bp
Strand : -
Note : PFAM: periplasmic binding protein; KEGG: eca:ECA1076 iron-dicitrate transporter substrate-binding subunit

DNA sequence : 
ATGTTTGCTTTGATTCGCGTTGCCCTGATTGCAACACTTTGTCTGTTCGGACTGGGCCGTGCCAATGCCGTCACGGTGCA
GGATGAGCAAGGTTCCTTTACGCTAGATACACCGCCTCAGCGCATTGTGGTGCTGGAACTATCTTTTGCCGATGCATTGG
CAGCAATAGACGTCAGCCCGGTCGGCATCGCCGATGACAACGATCCAGACCGGATTTTGGCCGAAGTCCGTGAGCACCTA
AAGCCCTGGCATTCCGTAGGAACACGCGCACAGCCGAGTCTGGAAGCCATCAGCGCGCTGAAGCCTGATTTAATTATCGC
TGACAGTAGCCGTCATAGCGGTATTTACACGGCGCTGAAGGCGATTGCGCCCGTGCTACTGCTGAAATCGCGTAACGAAA
CCTATGAAGAGAACCTGCACTCTGCGGAGATCATCGGCAAAGTGCTGGGGAAAGACAGCGCTATGCAGGCTCGTCTCACC
CAACACCGCGAAACCATGAAAACCTACGCCAACCAGCTTCCCAAAGGGACAAGTGTCGCCTTCGGTACTTCACGCGAGCA
GCAGTTTAACCTGTACTCCAGCGAGGCCTACACTGGCAGCGTGCTGGCCGCACTCGGCCTGAGCGTGCCTAAACCGATTA
ATAATGCACCAATGGCCTCCATCAATCTGGAACAGCTGTTGGCGATTAACCCGCAGTGGCTGATAGTGACGCACTACCGC
GAAGAAAGTATCGTTAAACGCTGGCAGCAGGATGCGCTCTGGAACATGCTGGAAGCCCAGAAAAAACAACAGATTGCCGC
CGTAGACAGTAACGCCTGGGCGCGGATGCGCGGTATTTTTGCTGCGGAACGCATCGGCAGCGACACGGTGAAGATTTTTA
AGCATCAGCCCGTTAGCGTCAGCAGCGAGCAATGA

Protein sequence : 
MFALIRVALIATLCLFGLGRANAVTVQDEQGSFTLDTPPQRIVVLELSFADALAAIDVSPVGIADDNDPDRILAEVREHL
KPWHSVGTRAQPSLEAISALKPDLIIADSSRHSGIYTALKAIAPVLLLKSRNETYEENLHSAEIIGKVLGKDSAMQARLT
QHRETMKTYANQLPKGTSVAFGTSREQQFNLYSSEAYTGSVLAALGLSVPKPINNAPMASINLEQLLAINPQWLIVTHYR
EESIVKRWQQDALWNMLEAQKKQQIAAVDSNAWARMRGIFAAERIGSDTVKIFKHQPVSVSSEQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fecB AAL08454.1 FecB Virulence SRL Protein 8e-105 73

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PC1_0974 YP_003016560.1 periplasmic binding protein VFG1045 Protein 4e-105 73