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Name : PC1_1021 (PC1_1021) Accession : YP_003016606.1 Strain : Pectobacterium carotovorum PC1 Genome accession: NC_012917 Putative virulence/resistance : Unknown Product : protein-export membrane protein SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 1192625 - 1194439 bp Length : 1815 bp Strand : + Note : TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: eca:ECA1122 preprotein translocase subunit SecD DNA sequence : ATGCTGGTCGTGGTGTTATTCGTCGGCCTGCTCTACGCACTTCCTAACCTATATGGTGAGGATCCGGCGGTACAAGTTAC TGGCGCGCGGGGAACCGCCGCCAGCGAAACGACGCTGATCCAAGTCCAGAATGTCTTAAAAGAACAAAACATTACCAGTA AGTCGATTGCATTGGAAAATGGTGCAATTCTGGCTCGCTTCTCTAACCCTGATATTCAGCTCCGCGCGCGTGAAGCGCTC GTTAATGAGCTGGGCGAAAAATTCGTCGTTGCACTTAACCTGGCTCCTGCTACGCCAAATTGGCTGCGGTTGTTAGGCGC TGAACCGATGAAATTGGGGCTCGACCTGCGCGGCGGCGTTCACTTCCTGATGGAAGTGGATATGGATACGGCGCTGGGTA AACTGCAAGAACAAACCATGGACTCTTTGCGCAGCGATCTGCGTGAGAAGAACATCCCTTATGCCTCCGTGCGTAAAATT GATAATTACGGCGTCGAAATTCGTTTCCGTGATGCTCAAACGCGTGATGACGGTATCAACTATCTGACGTCCCGTCATCG CAATCTGGTTCTCAGCAGCAGCGGCAGCAACCTGCTACGCGCGGTGATGTCTGACGAACGTCTGCGTGAAGCACGTGAAT ACGCCGTACAGCAGAACATCAATATCCTGCGTAACCGTGTGAACCAACTGGGCGTTGCCGAACCACTGGTACAGCGTCAG GGTGCCGATCGTATCGTTGTTGAGTTACCGGGTATTCAGGACACGGCGCGCGCGAAAGAAATTCTTGGTGCCACCGCTAC GCTGGAATTCCGTCTGGTCAACAGTAATGCTGATGCGACCGCAGCGGCGAACGGCCGCGTGCCGGGCGATTCCGAAGTGA AGAACATGCGTGATGGTTCACCCGTTGTGTTGTTCAAACGCGTCATTCTGACGGGCGACCACATCACTGACTCAACATCA AGCAATGACGAATACAACCGTCCCCAAGTGAATATTTCTCTGGACAGTGCTGGTGGTAACACCATGTCCAACTTCACTAA AGACAGTATCGGCAAGCTGATGGCGACGCTGTTCGTGGAATACAAAGACAGCGGTAAGAAAGATGCAACGGGCCGTTCGA TACTGGAAAAACACGAAGAAGTGATCAACGTAGCGACGATTCAGTCGCGACTGGGTAACAGCTTCCGTATTACCGGTATT GATAATCCGAACGAAGCGCGTCAACTGTCTCTGCTGCTGCGTGCGGGTGCGCTGATTGCGCCGATTCAGATTGTGGAAGA ACGTACCATTGGGCCAACGCTGGGGATGCAAAACATCACTCAGGGGCTGGAGGCCTGCTTGTGGGGCTTGATCGCATCGA TCCTCTTCATGGTCTTCTTCTATAAGAAGTTTGGCGTCATCGCGACCAGTGCATTGGTTGCTAACCTGGTATTGATTGTC GGCGTGATGTCGCTGCTGCCAGGCGCGACGCTAACCATGCCGGGTATCGCGGGTATCGTGCTTACACTGGCGGTCGCCGT GGATGCTAACGTACTCATTAACGAACGTATCAAGGAAGAACTCAGTAATGGTCGCTCCGTGCAGCAGGCTATTCATGAGG GCTACAAAGGGGCATTCAGCTCCATTGTTGATGCGAACGTCACGACGTTGATTAAAGTCATCATCCTGTATGCGGTTGGT ACCGGTTCTATCAAAGGGTTTGCTATCACCACTGCGATTGGGATTGCGACCTCAATGTTTACGGCGATCGTCGGTACTCG TGCCATCGTTAACCTGCTTTACGGCGGTAAACGCATCAACAAGCTGTCTATCTGA Protein sequence : MLVVVLFVGLLYALPNLYGEDPAVQVTGARGTAASETTLIQVQNVLKEQNITSKSIALENGAILARFSNPDIQLRAREAL VNELGEKFVVALNLAPATPNWLRLLGAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQTMDSLRSDLREKNIPYASVRKI DNYGVEIRFRDAQTRDDGINYLTSRHRNLVLSSSGSNLLRAVMSDERLREAREYAVQQNINILRNRVNQLGVAEPLVQRQ GADRIVVELPGIQDTARAKEILGATATLEFRLVNSNADATAAANGRVPGDSEVKNMRDGSPVVLFKRVILTGDHITDSTS SNDEYNRPQVNISLDSAGGNTMSNFTKDSIGKLMATLFVEYKDSGKKDATGRSILEKHEEVINVATIQSRLGNSFRITGI DNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNITQGLEACLWGLIASILFMVFFYKKFGVIATSALVANLVLIV GVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELSNGRSVQQAIHEGYKGAFSSIVDANVTTLIKVIILYAVG TGSIKGFAITTAIGIATSMFTAIVGTRAIVNLLYGGKRINKLSI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 2e-117 | 47 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 9e-117 | 47 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 9e-117 | 47 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 9e-117 | 47 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 6e-117 | 47 |
