|
Name : PC1_1151 (PC1_1151) Accession : YP_003016735.1 Strain : Pectobacterium carotovorum PC1 Genome accession: NC_012917 Putative virulence/resistance : Virulence Product : ECF subfamily RNA polymerase sigma-24 subunit Function : - COG functional category : K : Transcription COG ID : COG1595 EC number : - Position : 1344873 - 1345394 bp Length : 522 bp Strand : - Note : TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: eca:ECA1274 RNA polymerase sigma factor DNA sequence : ATGTACACAGAGGCTGTTAAAAAACCCGACTTGCTGTCGCTGATATTTCGCAGCGATTATCGCTGGCTAACGGAAAAATT ACGCCGCCGCATTGCCTATGGCTGTGAAGCGGAAGATGTCGCTTCCGAGGCCTTTCTGCGTTTAGCCTCTCTGCCGAATC TCGCCAACGTACAAGAACCGCGCGCGATGTTAACGACACTCGCCAAACGCGTGCTGTATGAAAACTGGCGTCGGCGCGAT CTGGAAAAAGCCTACCTCACCGCACTGGCGAGCAAACCGGAGTTTCACCATCCGTCACCGGAAGAGCAACAGCTGTTGAT GGAGGCGCTGCTTACTATCGATCAGGCGCTGGATGGACTCTCCATCAAAGCACGACAGGCCTTTCTGTTCAGCCAGCTTG ATGGCATGACCTATGCGGATATTGCCGTACAGCTCGATGTCTCCGTCAGTATGGTCAGAAAATACATCGCCAAAGCGCTG ACCAATTGCTATTTGGCCACGCAGGACAGCAGTGATTTATAG Protein sequence : MYTEAVKKPDLLSLIFRSDYRWLTEKLRRRIAYGCEAEDVASEAFLRLASLPNLANVQEPRAMLTTLAKRVLYENWRRRD LEKAYLTALASKPEFHHPSPEEQQLLMEALLTIDQALDGLSIKARQAFLFSQLDGMTYADIAVQLDVSVSMVRKYIAKAL TNCYLATQDSSDL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AAL08458.1 | FecI | Virulence | SRL | Protein | 5e-29 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PC1_1151 | YP_003016735.1 | ECF subfamily RNA polymerase sigma-24 subunit | VFG1049 | Protein | 2e-29 | 46 |
