Gene Information

Name : PC1_1450 (PC1_1450)
Accession : YP_003017032.1
Strain : Pectobacterium carotovorum PC1
Genome accession: NC_012917
Putative virulence/resistance : Virulence
Product : TonB-dependent siderophore receptor
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG4771
EC number : -
Position : 1699373 - 1701595 bp
Length : 2223 bp
Strand : -
Note : TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: esa:ESA_01552 outer membrane receptor FepA

DNA sequence :
ATGCACAAACAGCAATTCCATACCATAAAACCACTGGCACTGATCGTTGCCGGACTACTCGGAGCACACTTAGGCACCGC
ACAGGCTGCCGATGAGGATGTGATGACCGTTAAGGCCACTGCCGAGCAGGAGTTAAAACAGCAGCCTGGGGTGTCGATCA
TCACGGCGGACGATATTAAAAAAGCGCCGCCCGTTAACGATCTCTCAGAAATCATTCGTAAGATGCCGGGCGTGAACCTC
ACAGGTAATAGCGCCACCGGCGCCAGAGGCAACAACCGCCAGATCGATCTGCGCGGCATGGGGCCGGAAAATACGCTGAT
TCTCATTGATGGCCGTCCGGTGACCTCACGTAACGCGATTCGCTACGCCTGGGACGGTGAACGGGATACCCGAGGCGATA
CGAACTGGGTGCCGGTAGAAGACGTGGAACGTATTGAAGTCATCCGTGGCCCGGCGGCGGCGCGCTACGGTTCTGGTGCA
GCGGGCGGCGTGGTGAATATCATCACCAAACGTCCGTCCAACGTCTGGACTGGTTCACTCTCGCTGTACGGCAATCAGCC
GGAAAACAGCAAAGAAGGCGCCACACGCCGTGCCAATATCAACCTAAGCGGCCCGCTGGCTGGTGATGCGCTCACCATGC
GCCTGTACGGCAATATCAATAAAACCGATTCCGACAGTTGGGATATCAACCGAAACCAGAATGGTTCCGCCGCAGCCGGA
CGCGAAGGGGTGCGCAATAAAGACCTCAATACCCTGCTGTCCTGGAAACTCTCTCCGCAGCAGATTGTTGATATTGAAGC
GGGCTATAGCCGTCAGGGTAATATCTATACTGGCGATACCCAGTTCAGCCTTGATCCCAGTTCACTGGGTAGCAACGTAC
CTGAATCATTGGCTCAGCGTGGAGCAGAAACCAACCGGCTTTATCGCCAGAATTATGCGATAACGCACAATGGCATTTGG
GATTGGGGACAATCCAAGTTGGGTTTCTCTTATGATCAAACGAATAACACCCGTATGCAGGAAGGGTTCACTGGTCGAAC
AGAAGGGGCTATTGCTGCCGATGGGGATTATAAGACCAGTCGTCTGAAGAATTACCGTCTGAATGGCGAGTTGAATATTC
CATTAGATTTCTGGGTAGAACAAACCCTAACGCTAGGCGCAGAGTGGAATCGTGAACAGCTAAACGATCCTGCCTCAACA
GGCTATCGCCCCACAGATCGCTCAGGGAACATAACCGATCCCACTATCGGTGGTATTTCCGCAGAACCTAGCCAGCGTAG
CAGCAAAAACAGCGCTGAACTCAGTGCGCTCTACTTTGAAGATAACATCGAAGTCGTACCCGGCACCAAAGTGATTCCCG
GTTTGCGCTTTGATTATCATGACAAATTTGGCGGCAATTACAGCCCCAGCCTGAACATCCAGCAGGAACTGGGCGAGATG
TTCAGCGTGAAAGCCGGTATTGCTCGCGCCTTTAAAGCACCAAACCTTTACCAATCCTCTACCGGTTATTTGCTTTATTC
ACGCGGTAACGGCTGCCCGTTCGGCGTGGATTATAATAACGGCGGCGGCTGCTATCTGGCAGGTAATGACAACCTGAATC
CCGAAATCAGCGTCAACAAAGAAATCGGTCTGGAATTCAAACATGCCGGCTGGCAGGCAGGTGTGACCTATTTCCGCAAT
GACTATAAAAACAAGATTGTTTCCGGCACGGATATTCTTGGGCTGACACAATCAAACGCAGCGATCTTGCGTTGGGAAAA
TGGCGGTAAAGCGCTAGTCGAGGGGCTGGAAGCCAACCTGCTGGTGCCGGTGGTGGAAGACACGCTGGACTGGAGCACCA
ACGCCACCTATATGATTGAATCAAAAAATAAAGACACCGGTAATCCGCTATCGATCATCCCGAAATACACCGTCAACACA
ATGCTGGATTGGCAGGCTACGGATAAACTGTCCGCCAACGTCAGTTGGACGATGTACGGCAAACAAAAGCCACGTCAATA
CGCGACGAACTGGACAGAGTACAACAGCGGACTTTCCTCACGCGAAATCGGCAGCTACTCCGTTGCGGGTGTCGGCGTGA
ACTACCAGTTCAACAAGAACCTGCGCGTCAATGCCGGTATCAGTAACCTGTTTGATAAGCAGATTTATCGCGAGGCGAAA
GGTGCGTCTACCTATAACGAACCGGGACGCGCTTACTATGCAGGGGTAACCACCTCATTCTGA

Protein sequence :
MHKQQFHTIKPLALIVAGLLGAHLGTAQAADEDVMTVKATAEQELKQQPGVSIITADDIKKAPPVNDLSEIIRKMPGVNL
TGNSATGARGNNRQIDLRGMGPENTLILIDGRPVTSRNAIRYAWDGERDTRGDTNWVPVEDVERIEVIRGPAAARYGSGA
AGGVVNIITKRPSNVWTGSLSLYGNQPENSKEGATRRANINLSGPLAGDALTMRLYGNINKTDSDSWDINRNQNGSAAAG
REGVRNKDLNTLLSWKLSPQQIVDIEAGYSRQGNIYTGDTQFSLDPSSLGSNVPESLAQRGAETNRLYRQNYAITHNGIW
DWGQSKLGFSYDQTNNTRMQEGFTGRTEGAIAADGDYKTSRLKNYRLNGELNIPLDFWVEQTLTLGAEWNREQLNDPAST
GYRPTDRSGNITDPTIGGISAEPSQRSSKNSAELSALYFEDNIEVVPGTKVIPGLRFDYHDKFGGNYSPSLNIQQELGEM
FSVKAGIARAFKAPNLYQSSTGYLLYSRGNGCPFGVDYNNGGGCYLAGNDNLNPEISVNKEIGLEFKHAGWQAGVTYFRN
DYKNKIVSGTDILGLTQSNAAILRWENGGKALVEGLEANLLVPVVEDTLDWSTNATYMIESKNKDTGNPLSIIPKYTVNT
MLDWQATDKLSANVSWTMYGKQKPRQYATNWTEYNSGLSSREIGSYSVAGVGVNYQFNKNLRVNAGISNLFDKQIYREAK
GASTYNEPGRAYYAGVTTSF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iroN CAC43424.1 IroN protein Virulence PAI III 536 Protein 0.0 67

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PC1_1450 YP_003017032.1 TonB-dependent siderophore receptor VFG1650 Protein 0.0 67
PC1_1450 YP_003017032.1 TonB-dependent siderophore receptor VFG0935 Protein 0.0 66
PC1_1450 YP_003017032.1 TonB-dependent siderophore receptor VFG0923 Protein 2e-155 50