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Name : PC1_2192 (PC1_2192) Accession : YP_003017767.1 Strain : Pectobacterium carotovorum PC1 Genome accession: NC_012917 Putative virulence/resistance : Virulence Product : type III secretion outer membrane pore, YscC/HrcC family Function : - COG functional category : N : Cell motility COG ID : COG1450 EC number : - Position : 2522585 - 2524654 bp Length : 2070 bp Strand : - Note : TIGRFAM: type III secretion outer membrane pore, YscC/HrcC family; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: eca:ECA2100 type III secretion protein DNA sequence : ATGCGTAAGGGATTGATGCGTCATCGATCGTATAGCATTTTGCTGGTGGTCTATCGCTGGTTTTGCTGGGCGGTGGTGCT AATGGGGATTATCCCTATGAATGGGGTGATTTCTCTGGCGCACGCCGCTACGCCAGCCGACTGGAACAAGGGGGCGTACG CCTATTCTGCCGAACAAACACCGCTGTCTGCGATTCTGACGGATTTTGCCAACAGCCACGGCGTAGATTTGGTGCTGGGC AACATTGCGGACAATGACGTCACGGCGAAAATTCGGGCGGAGACTCCCGTGCTGTTTCTCGACAGGCTGGCGTTGGAGCA CCGTTTTCAGTGGTTTGTGTATAACAACGCACTGTATGTCAGCCCGCAGGATGAACAGGCATCGGTGCGTCTGGAGATTT CCCCGGATGCCGCGCCTGATATTAAACAGGCGCTCAGTGGTATCGGGCTGCTCGATGCGCGCTTCGGCTGGGGGGAGTTA CCGGAAGAAGGTGTAGTGCTGGTCACCGGCCCGCAGGCGTATATCGATCTGATCCGTAATTTTAGCCAGCAGCGGGAAAA ACAGGACGAACGGCGTAAGGTCATGATTTTTCCTTTGCGCTATGCCTCGGTATCCGACCGGACGCTGCAATATCGCGATC AGAAGGTTACCATTCCCGGCGTTGCGACCATTCTCAATGAGTTGATGGATGGTCAGCGTGCGGCACCGGCGGGCGCATCG GGGCCGATGCCTGTGCAGCCGGATACGGGGATGGAAGCGATGCGGGACAGCACGCGTTCGCTGATGACCCGCCTGGCAAC CCGTAATAATCCAGGTCGCAGTGGGGATGCATCGAGCCGCGTGACGCTAAGTGGCAAGATTTCTGCCGATGTACGCAATA ACGCGTTGTTGATTCGGGATGATGAAAAACGCCGGGCGGAGTATCAGCAGCTCGTCGATCATATTGATGTGCCGCAAAAT CTGGTCAACATTGATGCCATTATTCTGGATGTGGACCGTACCGCTCTGTCGCGGCTGGAAGCAAACTGGCAGGCGCAGCT CGGCAATGTGAGCGCGGGCAGTACCATGATGATGGGGCGAAGCACCCTGTTTGTCAGCGATTTCAAACGCTTCTTCGCCG ATATTCAGGCGTTGGAAGGGGAAGGAACGGCCTCCATTGTCGCTAATCCTTCCGTACTGACGCTGGAGAATCAGCCCGCG ATTGTCGATTTCAGCCGGACGGCATTTATCACAGCGACGGGCGAACGTGTTGCAGACATTCAACCAGTGACTGCTGGCAC TAGCCTGCAGGTAACGCCGCGTGTGGTCGGCGAAGGCGCACAGCGCAGCATCCAGTTGGTTATTGATATCGAAGATGGTC AGGTTGAGACAGGGCGCGAAGGTGAAGCGTCGGGCGTGAAGCGGGGTACGGTCAGCACGCAGGCGCTGATTGGTGAGAAC CGTGCGCTGGTGCTGGGTGGTTTCCACGTCGAGGAGAGCGGCGATCGCGATCGTCGCATTCCGATCCTTGGGGATATCCC GCTGTTGGGGAAACTGTTTACCTCGACGCGCCACGAAGTCTCCCGCCGTGAACGCCTGTTTATCCTGACGCCGCACCTTG TCGGCGATCAAACCGATCCCACGCGCTACGTTTCCTCCGCCAATCGCCAGCAGTTGAACGGTGCGATGAATCGCGTCGCG CAGCGCAACGGTAAAACGGATCTCTATAGCCTGATTGAAGGCGCCTTTCGCGATCTCGCCAGCCGTCAGCTTCCCGCCGG ATTTAAGACTGTCAGCAACGGCGCGCGATTGGGTGAGGTGTGTCGCTCGCAGTCAGGCCTGATCTACGACAGCTCTCGCT ATCAGTGGTACGACAACGGTCAGGTGCGCCTGAGCGTCGGCGTTGTGCGCAACGGCGGAACACAGCCGCAGCGTTTTGAT GAGGCCGCCTGTGCCAGTAGCCGCACGCTGGCGGTAGCCGTATGGCCAAAAACGACGCTGGCACCGGGGGAATCCAGCGA GGTATTCCTGGCGTTGCAACCCGCGCTCGCGTCTCAGACCGCCCGGCGTCATGTACTGACATCTCGATAA Protein sequence : MRKGLMRHRSYSILLVVYRWFCWAVVLMGIIPMNGVISLAHAATPADWNKGAYAYSAEQTPLSAILTDFANSHGVDLVLG NIADNDVTAKIRAETPVLFLDRLALEHRFQWFVYNNALYVSPQDEQASVRLEISPDAAPDIKQALSGIGLLDARFGWGEL PEEGVVLVTGPQAYIDLIRNFSQQREKQDERRKVMIFPLRYASVSDRTLQYRDQKVTIPGVATILNELMDGQRAAPAGAS GPMPVQPDTGMEAMRDSTRSLMTRLATRNNPGRSGDASSRVTLSGKISADVRNNALLIRDDEKRRAEYQQLVDHIDVPQN LVNIDAIILDVDRTALSRLEANWQAQLGNVSAGSTMMMGRSTLFVSDFKRFFADIQALEGEGTASIVANPSVLTLENQPA IVDFSRTAFITATGERVADIQPVTAGTSLQVTPRVVGEGAQRSIQLVIDIEDGQVETGREGEASGVKRGTVSTQALIGEN RALVLGGFHVEESGDRDRRIPILGDIPLLGKLFTSTRHEVSRRERLFILTPHLVGDQTDPTRYVSSANRQQLNGAMNRVA QRNGKTDLYSLIEGAFRDLASRQLPAGFKTVSNGARLGEVCRSQSGLIYDSSRYQWYDNGQVRLSVGVVRNGGTQPQRFD EAACASSRTLAVAVWPKTTLAPGESSEVFLALQPALASQTARRHVLTSR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcC | AAB49179.1 | HrcC | Virulence | Hrp PAI | Protein | 0.0 | 68 |
| hrcC | AAT96274.1 | HrcC | Virulence | S-PAI | Protein | 3e-173 | 55 |
| hrcC | AAT96315.1 | HrcC | Virulence | S-PAI | Protein | 2e-173 | 55 |
| hrcC | AAT96354.1 | HrcC | Virulence | S-PAI | Protein | 4e-176 | 53 |
| hrcC | ABA47303.1 | HrcC | Virulence | S-PAI | Protein | 4e-179 | 53 |
| hrcC | AAB05085.2 | HrcC | Virulence | Hrp PAI | Protein | 4e-135 | 42 |
| hrcC | AAC34756.1 | HrcC | Virulence | Hrp PAI | Protein | 9e-132 | 42 |
| hrcC | AAT96206.1 | HrcC | Virulence | T-PAI | Protein | 1e-132 | 42 |
| hrcC | NP_791216.2 | outer-membrane type III secretion protein HrcC | Virulence | Hrp PAI | Protein | 3e-138 | 42 |
| hrcC | AAT96152.1 | HrcC | Virulence | T-PAI | Protein | 1e-129 | 41 |
