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Name : PC1_2214 (PC1_2214) Accession : YP_003017789.1 Strain : Pectobacterium carotovorum PC1 Genome accession: NC_012917 Putative virulence/resistance : Virulence Product : type III secretion protein SpaR/YscT/HrcT Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4791 EC number : - Position : 2543498 - 2544298 bp Length : 801 bp Strand : + Note : TIGRFAM: type III secretion protein SpaR/YscT/HrcT; PFAM: type III secretion system inner membrane R protein; KEGG: eca:ECA2077 type III secretion protein DNA sequence : ATGATCGCCACCATTCAGCACGTTTACGACTTTATCATCGCCATAACGCTCGGTATCGCCCGGCTGTATCCCTGCTTTAT TCTGGTGCCGGTTCTTTCACTCAACGTGCTGAAAGGCATGATGCGCAACGCGGTGGTGATTTCCCTGACGCTGCTGCCTG CTCCCATCGTACAACAGCAACTCCTGCTGACGCCGCTTTCCTGGCCGATGCTGCCCGGCCTGCTGTTGAAAGAGATTATT GTCGGGCTGCTCATCGCATTGATTCTGGCGATGCCGTTCTGGCTGTTTGAATCCGTCGGCGCCCTGTTCGATAACCAGCG CGGCGCGTTGATGGGCGGTCAGCTCAACCCTGCGCTGGGCTCGGACGCCACGCCGCTCGGCCATCTACTGAAACAGACCC TGATTCTTCTGCTGATTATTGGTATCGGCCTGAAGGGACTAACGCAGCTGATATGGGATAGCTACCAGATCTGGCCGGTA CTGTCCTGGCTGCCCGCGCCGGGCGAACAAGGGTTTGAGGTCTACCTCGACCTGCTGGCCGATACCTTCACCCATCTGGT GGTGTACGCCGGGCCACTGGTGGCGCTACTGCTGCTGTTGGAATTCAGTATTGCGCTACTCAGTCTGTATAGCCCACAGC TTCAAGTCTTCGTCCTCTCCATTCCGGCTAAGTGTCTGGTCGGGATGGCGTTTTTCATCGTCTACCTGCCGGTGCTGCAG TATCTGGGCGGCGACAGACTGAAGGGACTACCGGATCTTAAGCACCTGCTCCCACTACTTTTTACGGCATCGAATAGCTA A Protein sequence : MIATIQHVYDFIIAITLGIARLYPCFILVPVLSLNVLKGMMRNAVVISLTLLPAPIVQQQLLLTPLSWPMLPGLLLKEII VGLLIALILAMPFWLFESVGALFDNQRGALMGGQLNPALGSDATPLGHLLKQTLILLLIIGIGLKGLTQLIWDSYQIWPV LSWLPAPGEQGFEVYLDLLADTFTHLVVYAGPLVALLLLLEFSIALLSLYSPQLQVFVLSIPAKCLVGMAFFIVYLPVLQ YLGGDRLKGLPDLKHLLPLLFTASNS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcT | AAB06007.1 | HrcT | Virulence | Hrp PAI | Protein | 8e-53 | 69 |
| hrcT | ABA47281.1 | HrcT | Virulence | S-PAI | Protein | 7e-42 | 57 |
| hrcT | AAT96345.1 | HrcT | Virulence | S-PAI | Protein | 2e-40 | 56 |
| hrcT | AAT96264.1 | HrcT | Virulence | S-PAI | Protein | 2e-40 | 56 |
| hrcT | AAT96305.1 | HrcT | Virulence | S-PAI | Protein | 2e-40 | 56 |
| hrcT | NP_791220.1 | type III secretion protein HrcT | Virulence | Hrp PAI | Protein | 5e-33 | 49 |
| hrcT | AAG33886.1 | HrcT | Virulence | Hrp PAI | Protein | 3e-33 | 49 |
| hrpX | AAB05077.1 | HrpX | Virulence | Hrp PAI | Protein | 5e-34 | 48 |
| hrcT | ABQ88361.1 | HrcT | Virulence | Hrp PAI | Protein | 5e-34 | 48 |
| hrcT | AAT96148.1 | HrcS | Virulence | T-PAI | Protein | 6e-34 | 47 |
| hrcT | AAT96202.1 | HrcT | Virulence | T-PAI | Protein | 6e-34 | 47 |
