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Name : PC1_3139 (PC1_3139) Accession : YP_003018698.1 Strain : Pectobacterium carotovorum PC1 Genome accession: NC_012917 Putative virulence/resistance : Unknown Product : lytic transglycosylase Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG0741 EC number : - Position : 3552487 - 3553860 bp Length : 1374 bp Strand : + Note : PFAM: Lytic transglycosylase catalytic; MLTD_N domain protein; Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: eca:ECA3343 membrane-bound lytic murein transglycosylase D DNA sequence : ATGAAGGCTAAAGCGATAATCATCGCCTCAGTCTTGCTGGCGGGTTGTCAGGTTTCCCCCCATGACACCTCGCAACCCAA ACAGCATGCACAGAGTTTGTCTTCGGCAAGTCAAGGTGAAGCAGGAAAGTACACAGATGGTCGAGAGGCCTCTGCGCGAT GGCTAGATGACGATAGCCTCGCGCAACGAGATCTGTGGAACTTCATTGGCGACGAGCTGAAGATGGAGGTTCCGGATAAC GCCCGGATCCGCGAGCAAAAAACGCGTTATTTGAAAAATAAGAGCTATCTCCACGATGTAACATTACGGGCAGAGCCGTA CATGTACTGGATAGTCGAGCAGATTAAGCAACGTAAAATGCCGATGGAACTGGTACTGCTACCCATAGTGGAGAGCGCTT TTGATCCAAGTGCCACATCATCCGCCAACGCCGCTGGGCTATGGCAGATTATCCCTGGCACAGGACGTAATTATGGTTTG AAGCAGAACCAATGGTACGACGGACGTCGCGATGTGATTGCATCCACGACGGCAGCACTGGATATGATGCAGCGGCTCAA CACCATGTTTGATGGCGATTGGTTATTAACCGTTGCTGCTTATAACAGTGGTGAAGGCCGCGTTATGCAGGCGATGAAAG CGAATAAAGCGAAAGGGAAATCAACCAACTTCTGGGCACTGGCGTTACCGCGTGAAACGTCAATTTATGTTCCTAAGATG CTGGCCTTGAGCGATATTCTGAAAAACAGTAAGAAGTACGGCGTGAATCTGCCGCAACCCAATGAAAGCCGCGCATTAGC AAAGGTTGAGTTGGGACAGCAGATAGAACTGACACAAGCCGCTGAGATGGCTGGTCTGTCGTTGAATAAGCTAAAGAGCT ATAACTCGGGCTATAAGCGTAATGTAACCGCACCAAATGGGCCACATTACATTATGGTTCCTAAAGCTCACGTTGAGCAG TTGAAAGATTCACTGGCTGATGGAGACATCGCAGCGATTCAACCAACACGCTTGGCACAAGCACAGACAACGCCAGTATC ACAGCAGTATAAGGTACGTTCAGGTGATACCTTATCGGCAATTGCGGCACGGCTTAATGTCAGCACAAAAGATTTGCAGA GTTGGAACAATCTGCGTAGCGCTGGTGCGCTCAAGGTTGGTCAGACGCTACAAGTTGCCAAAGCTTCGGGCAGTAGCAGC TCTATCACCTATCAAGTTCGGAAGGGTGATTCGCTGGCAAGCATTGCTAAACGCCACGGCGTAAATATCGCTGATGTGAT GCGCTGGAATACTGTTATCAACAAGAATGCCAACATCCAGCCAGGCGATCGTCTGACACTTTATGTTAGCAGCAATATAA AGCCTGATTCTTAA Protein sequence : MKAKAIIIASVLLAGCQVSPHDTSQPKQHAQSLSSASQGEAGKYTDGREASARWLDDDSLAQRDLWNFIGDELKMEVPDN ARIREQKTRYLKNKSYLHDVTLRAEPYMYWIVEQIKQRKMPMELVLLPIVESAFDPSATSSANAAGLWQIIPGTGRNYGL KQNQWYDGRRDVIASTTAALDMMQRLNTMFDGDWLLTVAAYNSGEGRVMQAMKANKAKGKSTNFWALALPRETSIYVPKM LALSDILKNSKKYGVNLPQPNESRALAKVELGQQIELTQAAEMAGLSLNKLKSYNSGYKRNVTAPNGPHYIMVPKAHVEQ LKDSLADGDIAAIQPTRLAQAQTTPVSQQYKVRSGDTLSAIAARLNVSTKDLQSWNNLRSAGALKVGQTLQVAKASGSSS SITYQVRKGDSLASIAKRHGVNIADVMRWNTVINKNANIQPGDRLTLYVSSNIKPDS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| mltD | AAO17227.1 | MltD | Not tested | tcd island | Protein | 2e-136 | 63 |
