|
Name : PC1_3238 (PC1_3238) Accession : YP_003018794.1 Strain : Pectobacterium carotovorum PC1 Genome accession: NC_012917 Putative virulence/resistance : Unknown Product : type VI secretion system Vgr family protein Function : - COG functional category : S : Function unknown COG ID : COG3501 EC number : - Position : 3647323 - 3649359 bp Length : 2037 bp Strand : - Note : TIGRFAM: type VI secretion system Vgr family protein; Rhs element Vgr protein; PFAM: Rhs element Vgr protein; KEGG: eca:ECA3427 hypothetical protein DNA sequence : GTGGCAAACAGTACAGGATTACAGTTCACCGTTAAGGTCGGTGCCCTGGCGGCAGGCACTTTTGCAGTAGTGGATTTCAG GTTGGATGAAGGATTGAACCGGCCTTTCAGCCTGTCGCTGAGTCTGGCGAGTGCACAGCCGGATGTCGATTTCGGCGCGG TGTTGGACCAGCCGTGCGAGCTGATGATTTGGTATGAAGGCGAGCTGAAACGCCGGGTCAGCGGGATTGTCAGTGGCTTC ACGCAGGGCGACACCGGTTTTCGGCGCACGCGCTATCAGATAGAAGTTCGTCCGGCGCTGTGGCGACTGGGGCTGCGCAC CAACGCCCGTATTTTTCAGGCACAAAAGCCGGAAGCCATTATCAGCATGCTGCTGGAAGAGGCTGGCATCACTGACTACG CCTTTGCGCTGCGTAACGAGCATGCGGTGCGGGAATATTGCGTGCAGTACCGGGAAAGCGATTTGGCGTTTATCACCCGT CTGGCTGCGGAGGAAGGCATGTACTTCTTCCACGAATATGAAGAGGGCAAACACCGGGTGGTGTTTGCCGACGATGCGGG GGCGCTGACCAAAGGCCCCGAGCTGTTCTTCAATCTCGCCACGCAGGGGCTGAGCGAGGGCGAATACGTTCGGCGCTTCC ACTACGCAGAGCGGGTGAGCACGGCTGAAGTCGAGCTGAAAGACTATAGCTTCAAGACGCCGGCTTACGGGCTGTCGCAC AAGAAGATGAGCGGTGAGCTGGAACACCAGCGTGAAAGTTACCAACATTACGACTATCCGGGACGCTATAAACAAGACCC GAGCGGCAAGGCGTTCAGCGGCTACCGGCTGGATGCGTTGCGGTCTGGAGCCGTGACGAGCGAAGGGGAATCCAACTGCG CGGGGCTGATGCCGGGCAGTACGTTTACCCTGACAGAGCACCCGAATGCGACGCTGAATGCGGTGTGGCAGACGGTGAGC GTGACGCACGTCGGGCAACAGCCGCAGGCACTGGAAGAGGAAAGCGGTGGCGAACCAACCACGATGAGCAACAGTTTTGC GGTGGTGAAAGGGACAACAACGTGGCGCGCCGCGATGCCGTATAAACCGATGGTGGACGGCCCGCAAATCGCCACTGTTG TCGGTCCGACTGGGGAAGAAATCTACTGTGACCCGTATGGTCGGGTGAAACTGCAATTCCCGTGGGACAGATACGGCGCG AGCAATGACCAGAGCTCCTGCTGGGTGCGGGTGAGTCAGGGCTGGGCGGGCGGTCAGTACGGCATGATTGCTATCCCCCG TATCGGCCATGAAGTGATCGTCAGCTTCCTTGAAGGTGACCCGGATCAGCCGATTGTCACCGGGCGTACCTTCCACGCGA CCAATCCGACACCGTACGTTTTACCGGCACATAAAACGCGCACGACGCTACGTACCGATACTCATAAAGGCAGTGGCTTC AACGAACTGCGTTTTGAGGATGAGGCGACGCGTGAACAAATTTACTATCACGCTCAGAAAGATATGGATGGTGTCATCAA CAACATCCATCGGCAGAGTGTCGGGCGCGATCAGCACCTCAGCGTGGATCAAGATCAGTTCCAACGGGTTACTCGTCACC GTCACCGAACGATAGGTAAGGACGATTTTGAAAATATCGGTCAGGACCATCATCAGGAAATTGGTCGGAGCTTTATTCAG AAGATTGGTGCGTCGTTCAAACGTTTCATCGGCGGGGGAGAGATTACCCGTATCGAAGGGAGTCGGCAGACTACGATGTC CGGTTCTGAAGAGACGCTGATCGGTGCGCACCAGCGTGTTCTGGTGAATACGGACAGCTACCTGAAAGCCGCCGATATCG TACTGGAAGCAGGGCAAGCGTTGACCATCAAGGCGCCGGGCGGTTTTATCAAGATTGATAGCGCGGGCGTGACGATTTCC GGGACGATTGTAAAAATCAACGACGGCGGTGCGGCTGGCGTAGGGACTGCGCCGGTATCGATTACGCCAGAAGATCCGAC GAAGCCCACGCTGCCGGATGCACCAGACAGACGTTAA Protein sequence : MANSTGLQFTVKVGALAAGTFAVVDFRLDEGLNRPFSLSLSLASAQPDVDFGAVLDQPCELMIWYEGELKRRVSGIVSGF TQGDTGFRRTRYQIEVRPALWRLGLRTNARIFQAQKPEAIISMLLEEAGITDYAFALRNEHAVREYCVQYRESDLAFITR LAAEEGMYFFHEYEEGKHRVVFADDAGALTKGPELFFNLATQGLSEGEYVRRFHYAERVSTAEVELKDYSFKTPAYGLSH KKMSGELEHQRESYQHYDYPGRYKQDPSGKAFSGYRLDALRSGAVTSEGESNCAGLMPGSTFTLTEHPNATLNAVWQTVS VTHVGQQPQALEEESGGEPTTMSNSFAVVKGTTTWRAAMPYKPMVDGPQIATVVGPTGEEIYCDPYGRVKLQFPWDRYGA SNDQSSCWVRVSQGWAGGQYGMIAIPRIGHEVIVSFLEGDPDQPIVTGRTFHATNPTPYVLPAHKTRTTLRTDTHKGSGF NELRFEDEATREQIYYHAQKDMDGVINNIHRQSVGRDQHLSVDQDQFQRVTRHRHRTIGKDDFENIGQDHHQEIGRSFIQ KIGASFKRFIGGGEITRIEGSRQTTMSGSEETLIGAHQRVLVNTDSYLKAADIVLEAGQALTIKAPGGFIKIDSAGVTIS GTIVKINDGGAAGVGTAPVSITPEDPTKPTLPDAPDRR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| vgrG | AAN64196.1 | VgrG | Not tested | macrophage toxin pathogenicity island | Protein | 4e-145 | 47 |
