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Name : PC1_3242 (PC1_3242) Accession : YP_003018798.1 Strain : Pectobacterium carotovorum PC1 Genome accession: NC_012917 Putative virulence/resistance : Unknown Product : type VI secretion protein IcmF Function : - COG functional category : S : Function unknown COG ID : COG3523 EC number : - Position : 3653515 - 3657012 bp Length : 3498 bp Strand : - Note : TIGRFAM: type VI secretion protein IcmF; PFAM: ImcF domain protein; protein of unknown function DUF1215; KEGG: eca:ECA3432 putative virulence-associated protein DNA sequence : ATGTTTAAAACAATCATAACCTTTCTACGCAAGCAGTTGCCTAAACTGAAACCCTCCTGGCTACTTTTGGGCGTGCTACT GTGGATCGTCGTGCTGGTTCTGGCCTGGTGGCTGGGACCGCGTTTGGTGGTGGGCGAATCACGCCCGTTACAGGGAATCT GGGGCCGCGTGGTGTTCACGCTGGTCTGGCTGTGGCTGGCGTTCTCCTATAGTGCCTGGATGGTCTGGCGTCGTGTGCAG CAGATGCGTGCAGAGCGTCATGAACAACAGGTAATTGAGCAGGATCCCCTGCAGGTGTATGTCGATAGCCAGCAGACGTT TCTCGATCGCTGGCTGGAGGCGTTTCAGACCCAACTGGGTAAACGCGCACTGTATGCGATGCCCTGGTATCTGACGATTG GTCTGGCTGGCAGCGGGAAAAGCAGCCTGATCCATCGTGCCAACCCGGCAAACAAAATGAACCCGAAGCTGGATGCGGAA CTGCGAGACGTGGCGGCAGGCCAGCAGGTGAGCAGTTGGGTCGGTGAGTCTGCCGTTATCTGGGACCCCAGCGGACAGCT ACTCGCGCAGCCTGAACTGGAAGGCGATTCACTCGGACAGCGTTATGCTCGACTGTGGCAGCACCTGCTCCAGTGGTTGA GTGAAAACCGCCGCCGCCAGCCGCTTAATGGTCTGGTGCTCACGCTGGATATTTCCTGGCTGGCACAGGCTGGCGTCGCG GATCGCAAAGCTTATGCGCAGGTCATGCGCGCGCGTTTGCAGGAAATTTCCGTCAACATCAATACGCGTTTACCGGTGTA TATCGCGCTGACCCGGCTGGATATGCTGAGCGGCTTCGATAAGGTCTATCGCCAGTTAAACCGCGACGCGCGTCAGGCAG TATTAGGGGTGACCTTTACCCCGCAGGCGAGCAATGGCAAAGGTTGGCTAGAAGAGCTGGAGCGTTTCTGGGATGAGTGG GTCACGCACCTGAATGACAACCTGCCAGACATGCTGCTGACGCAGTCCGACAGAAGCGTGCGCAATTCGCTGTTCTCGTT CGTCCGCCAACTCGCTGGCGTGAAAGATTATGTGATGGAAGTGCTGACGGAAACGTTAGCGACGGGCGAGGATCGCGCGT TTCTGATCCGCGGTGTCTATGTGAGTTCTGTCTATCAGCAAGGGGTACCGTTCGACGCCTTTGCGCAGTCGGCTTCCCGA CGCTATCAACTGCCTGAACCGATTAATCCTGCGCTGCGCGGGGAATCCAATACGTTCTTTGTGCAGCGTCTTTTCCCTGA CGTCATCTTCCCTGAAGCCAGTCTGGCAGGTGAAAACCGGCTGCATAGCCTCTATCGTCGGCGTCGACTGAGCATCGGCG TAGGTTGCATGCTGCTTGCCAGTCTGGTGCTGATTGGCAGTTGGCACCATTTCTATCGGGTCAATGAAGAGGCCGGACGT AACGTACTGACGAAAGCGCAGGCGTTTATCGGCACCAATGAACTGGAAGGGCAGCCGGGCTACGGTTATCAGCAGTTGCC GCGGTTGAATTTGATTCGCGATGCGACCTTATCTTTTGGTAATTACCACGAACGTACGCCGATGCTGGCCGACCTTGGCC TGTATCAGGGCGGTAAGATTGGGCCTTATGTTGAAGGCACTTACCTGCAAATGCTGAACCAGCGCTTTCTTCCGGCAGTG ATGCAAGGGCTGCTGGAGGATTTGAATCAGGCGCCTGCCAATAGTGAGCAAAAGCTGACGATTCTGCGCGTGATGCGGAT GCTGGATGATGCGTCAGGGCGTAATAAATCGCTGGTCGAACAGTTTATGGCGCAGCGTTGGCAGAAGGCATTTCCCGGTC AGGGCAATGTACAGGAACAGCTGATGCAGCATCTGGATTATGCCCTTGAGCACACGGATTGGCACAAGGCGCGTGAGCAG AAAGATGCGGTAGCCATCAGCACGTTTGCTCCCTTTAATCAGCCGATTACGCTGGCCCAGCAGGAACTGAGCAAGCTGCC GATGTATCAGCGCGTTTATCAGAGCCTGGTCATGAAGGCGACACAGGTGTTGCCGCCGGATTTAGCGATCCGTGATGAGG TTGGGCCGACCTTTGACCCGGTGTTTTCCCTGCGTAATGACAAAGCGGGAAGTGTGCCGCGACTGCTGACGTACCCCGGC TTTAGTGATTATTACCTCAAGCAGGACAAAGCCCTGTTAGAGCTGACGGCGCTGGATGCCTGGGTACTGGGGCAGCGTGA GCGTGCGCAGTTCAGCGAGGCCGATCGGCGTGAAATTCTGCGTCAGGTTAACGATCGCTACATTACGGATTACATCAACC AGTGGCAGAAAGTGCTGGCGAACATTGATGTGCAGACGCTCGATACGCCGGAGCAGGCGCTCGATATTCTCACGGATATT ACCGGCAACGATCAGCCTTTCCAGCGCGTGCTGACGACGGTTAGTGATAACACCCGCATTCGTAAGCTGGCCGATGATGA CAACGACACGGCGCAGAACATCAATACGCGGATTGGTCGTCCGTTTATGACCATCAACGCGGCGCTGAGCGGACGTGGTG AGCAAGGGCCGCTGGTGCAAGAGGTCAATCAGAAGCTGACCGATCTCTATCACTATCTCGATCAGATCGTTAACGCGACC GATCCTGGGCAGGCGGCGTTGAAAGCGGTGCAGGCGCGGCAGGGAAATAAATTTGCCGATCCGGTATTCGCTTTACAGCA ATACGCCCGCAGCCTTCCCGCACCGCTGGATCGCTGGGTCGGACAGCTCGCCGGAGAGAGCGCGAGTTTGGTGACCGGAC TGGCAATGTCGTCACTGAATCAGGAATGGCTGGATAAAGTCGTGACGCCATTCAATGAGAAGCTGGCGGATCGCTATCCC TTCGACCCGTCATCGAACAAGGATGTGCCGCTGTCGGAAATGGAAATGTTCTTCATGGCTGGCGGGACGCTGGACAGCTT CTATCAAACCAACCTCAAGGCGATGATGGAAAGCGGCATGCTGGAAGAAGGCATGGCGTCGCCGTTGCAGGCTGAACTGG TGAAACAGCTTGAACGCGCCACTCGCATCCGCCAGACCCTGTTTAATGCGCAGGGCAGTCTGGAAGTGCATTTCGTGCTG GAGCCGCTGGAACTGACGGCGAACAAGCGCCGCAGCGTACTCAATTTGGATGGACAACTGCTGGAATACAGCCACGGTCG TCGCCAGAAAACGCCGTTGGTATGGCCAAACAGTATGCGTGACGGGGCTGAAAGCAAGCTGACACTGGTGCCGGACGATC GTGAGCGTTCACCGCGCAGCCTGAGCTTTAGCGGGCCGTGGGCGATGTTCCGGTTAATCAATAGCGATCAACTGACTCAG GTTAATGAGAACACCTTTGACGTGCGTTTCTCGCTGGAGAACGGTGCGATGACGTATCGCGTGTATACCGATGCCAGCCA TAACCCGTTTGCCGGTGGTCTGTTCAGCCAGTTCACGCTGCCTGACTCTCTTTATTAA Protein sequence : MFKTIITFLRKQLPKLKPSWLLLGVLLWIVVLVLAWWLGPRLVVGESRPLQGIWGRVVFTLVWLWLAFSYSAWMVWRRVQ QMRAERHEQQVIEQDPLQVYVDSQQTFLDRWLEAFQTQLGKRALYAMPWYLTIGLAGSGKSSLIHRANPANKMNPKLDAE LRDVAAGQQVSSWVGESAVIWDPSGQLLAQPELEGDSLGQRYARLWQHLLQWLSENRRRQPLNGLVLTLDISWLAQAGVA DRKAYAQVMRARLQEISVNINTRLPVYIALTRLDMLSGFDKVYRQLNRDARQAVLGVTFTPQASNGKGWLEELERFWDEW VTHLNDNLPDMLLTQSDRSVRNSLFSFVRQLAGVKDYVMEVLTETLATGEDRAFLIRGVYVSSVYQQGVPFDAFAQSASR RYQLPEPINPALRGESNTFFVQRLFPDVIFPEASLAGENRLHSLYRRRRLSIGVGCMLLASLVLIGSWHHFYRVNEEAGR NVLTKAQAFIGTNELEGQPGYGYQQLPRLNLIRDATLSFGNYHERTPMLADLGLYQGGKIGPYVEGTYLQMLNQRFLPAV MQGLLEDLNQAPANSEQKLTILRVMRMLDDASGRNKSLVEQFMAQRWQKAFPGQGNVQEQLMQHLDYALEHTDWHKAREQ KDAVAISTFAPFNQPITLAQQELSKLPMYQRVYQSLVMKATQVLPPDLAIRDEVGPTFDPVFSLRNDKAGSVPRLLTYPG FSDYYLKQDKALLELTALDAWVLGQRERAQFSEADRREILRQVNDRYITDYINQWQKVLANIDVQTLDTPEQALDILTDI TGNDQPFQRVLTTVSDNTRIRKLADDDNDTAQNINTRIGRPFMTINAALSGRGEQGPLVQEVNQKLTDLYHYLDQIVNAT DPGQAALKAVQARQGNKFADPVFALQQYARSLPAPLDRWVGQLAGESASLVTGLAMSSLNQEWLDKVVTPFNEKLADRYP FDPSSNKDVPLSEMEMFFMAGGTLDSFYQTNLKAMMESGMLEEGMASPLQAELVKQLERATRIRQTLFNAQGSLEVHFVL EPLELTANKRRSVLNLDGQLLEYSHGRRQKTPLVWPNSMRDGAESKLTLVPDDRERSPRSLSFSGPWAMFRLINSDQLTQ VNENTFDVRFSLENGAMTYRVYTDASHNPFAGGLFSQFTLPDSLY |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| aec30 | AAQ96724.1 | Aec30 | Not tested | AGI-1 | Protein | 0.0 | 45 |
| pmt1 | AAN64194.1 | Pmt1 | Not tested | macrophage toxin pathogenicity island | Protein | 0.0 | 45 |
| aec30 | YP_851415.1 | hypothetical protein | Not tested | PAI II APEC-O1 | Protein | 0.0 | 45 |
