Gene Information

Name : PC1_4194 (PC1_4194)
Accession : YP_003019744.1
Strain : Pectobacterium carotovorum PC1
Genome accession: NC_012917
Putative virulence/resistance : Virulence
Product : ECF subfamily RNA polymerase sigma-24 subunit
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 4733754 - 4734266 bp
Length : 513 bp
Strand : -
Note : TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: eca:ECA0057 ECF family RNA polymerase sigma factor

DNA sequence : 
ATGGTGAGGAAAGCGACGGCCAGCGTTAATGACTTTGCTCAGCAGCTCTATTTCGATCACCACCGCTGGTTGTATAACTG
GCTGCGCCATAAACTGGACTGCGCCCAGCATGCGGAAGATTTGGCACAGGACACGTTCCTTAGCGTGCTGATGAACCCGG
AGTTGCTCACGATTCGCCAGCCGCGCCCGTTTCTGGCCACCGTGGCTCGCCGTCTGGTCGCCAATCACTACCGCCGTAAA
AAGATTGAAGATGCCTATCTGGACGTGTTGAGTTCACAGCCGGATGCCTGTATGCCATCCCCGGAAACGCGTCTCCTTAC
CCTCGAAATTCTTGAACAGCTTGATGCTGCGCTGGACGGCCTGCCCGCGCCGGTCAGGGAAGCGTTTTTGCTGGCGCATC
TCCACGGCATGCGCTACAGCGATATTGCCGAACGTTTACGCGTTTCCAGCAGTTCGGTGAAACAGTATCTGCAACGTGCC
AACCTTCAGTGTTTCTTTGCGCTGCCGCTATGA

Protein sequence : 
MVRKATASVNDFAQQLYFDHHRWLYNWLRHKLDCAQHAEDLAQDTFLSVLMNPELLTIRQPRPFLATVARRLVANHYRRK
KIEDAYLDVLSSQPDACMPSPETRLLTLEILEQLDAALDGLPAPVREAFLLAHLHGMRYSDIAERLRVSSSSVKQYLQRA
NLQCFFALPL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 1e-34 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PC1_4194 YP_003019744.1 ECF subfamily RNA polymerase sigma-24 subunit VFG1049 Protein 4e-35 48