|
Name : PC1_0051 (PC1_0051) Accession : YP_003015649.1 Strain : Pectobacterium carotovorum PC1 Genome accession: NC_012917 Putative virulence/resistance : Unknown Product : YD repeat-containing protein Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG3209 EC number : - Position : 56584 - 60897 bp Length : 4314 bp Strand : - Note : TIGRFAM: YD repeat protein; PFAM: PAAR repeat-containing protein; YD repeat-containing protein; KEGG: eca:ECA4278 rhs-family protein DNA sequence : ATGCTGAGTGATATTCTGAACCGCGTTGCCCGCGTCGGTGCTATGCACGCAGGCAAAGGCCCGACGCCGCCTGCCGAACG TCCTCAACCGGGCCAGGGAAAAGCGCCGACATCACCGGGCAAAACCATCAAGCACAAAAGCTTTCTCGGCGCGCTGGCCG GCGCTATCGCTGGGGCGGTCGTTGCCGCGGTGGTTTTTGCCGCCGCAGCGGCTGTCGCAGGAGCGATTGCCGTCGCCGTT GTCGGGACGGGCGGCATGGGTGCGGCGCTGGTTGTCGGGGCAGTTAAACTGGCGGTGGGATTTGGTGCAGTCAGCCTATT GGGAGGGCTAATTAGCAGCGTCTCCAGCAAGGTTTCCGCCATGGTAGACAGCGGATCCCCGCCGTTTGGGCCGGTTTCTT CAGGCTCAGGAACGGTGTTTGCGGAGAAGCAGAAGATTTCCCGCGCCGAGGTTGACACGGTCGCCTGTACCAAACACAAC TCTCCTCAATTGATTGCGCAAGGCAGTGAGACCGTTTACGTCAATGGCTCTCCGGCTGCGCGTATCGACGATAAAACCGT CTGTGGTGCCACTATCAAGGAAGGAGCATCAACCGTCTTTTTTGGTTCTGGACAGCAAACCTGCCTGAAGATTAGTGACG AATTCAGTTGGTGGGAAAAAGCGCTACTGATCGCGGTGGAGTTTCTGGTGCCGCCCAGCCGGGGCATGTTCAAAGGGCTA GGCAAGCTGTTTACCCGTGGCCCTACTGCCGTGCTCAAAGGCATTCGGATGGGGGCGCTAAGAACAGCGGTAGGGCTACG AAAAGCGGTTCGCTGTGCCAGCAAAGGCTTTAAAAATAACAAAGGGTTAGCACGCATTAAGGAAGCCACTCGGGGCTTTC TGAAAGATCCGGTCTACATTCCCAGCGGGAATGTCATCGAAATGCGTCAGGATATTGAACTAGGGCAAACACTCCCCCTA CTTTTTGAGCGCACGTATCGATCCTCTTCCACCCATACCGGGTTGCTGGGGCGCGGCTGGTATGACACTTGGAGCGAAAC AGCGCAGGTCAGCCGTGATGGCCTCAATACCCACGTTGTCATCACGCTGGCGCAGGGATATGACATCGATTTTACGTTCC ATCAGGATGTGCAGTCGGTATTTTGTCCGCTCTATCCGGCTTTTACCCTGTATCGGCGGGCAAAGGGCTTTAGCCTGTGG GATCGCGACAGTCTCACCTGGCGTGAATTCGATGTGCCTCAGGGCGATCGGCTACTTCTGTCTTCGATACATGACCCGCA TGACAACCGCATTACCCTGATCCGCGATCCAAAAGGCTATCTGCGCAAGATCCGCCACAGCGACGATATCGAGCTACTGT TGGTGTGGCGAGGGGAATCTCTGCACCAGATACAGCGTATTGATACTGGGCAGAAAACCCTGCTGGCTGAATACCGACAG GACGAACAGGGTCGCCTGATCGAAGCCGATGCCGCCCATGCCTATCACCTGTTTTACGACTACGACAGCGAAAACCGACT CACCCGCTGGCATGACAACGACCAGACCTGGGCGCGTTACGAATATGACTATCAAGGCCGCTGCGTCTATACCACCTGTG CCGACGGCTACTTGACGGCGCATTTTGAGTATCTCGACGATCGCGTGGTGATGACCGACGGACTAGGTCAGCGCAGCGAA TTTGGTTTTAACGCGCTGTCGCTAATGAGTTGGGAGAAATCCCCGTTAGGGCGCATCACCCGCTACGACTACGACGACCA CGGCAACTTGCTACGTGAGATTTCCCCAGCTGGCCGGGTGGTTGAGTTCAGGTATCTGGACGATAGCGGTCTGGTCAGCG CCTTCACTGACGGCAGCGGCCATACCTGGGCCTATGACTACGACGAGGCGCAGCGGTTATGTGGCATCACCGATCCGCTG GGGCGCATCTGGCAATGGGCGTTCGATGAGACAGGCAACCCGGAGAAACTCACGGGACCAGATACCCGTGAAGTCCGATT TACCTGGAACCGCCATGGCCTGCTGACGCAGGTAAGCGATCAGGCCGGCGAGGTTCAGGCGCGACTGCGTTACGATCATC GTCAACGATTGCTGAGCGCCAGCGATGCGCTGGGGCGCACCCAGCAGTTGCGCTATGACCAGCAGGACAGAGTGGTGCAG TGGCAGCGGCCGGACGGCGCACAATACAGGCTAGGCTATCGTCGTGCGAGCTGGAAGCTACCGGAGCAACTCGTCCGTCC TGATGAGAAAGAAGAAAAACGCCAGTACGACAAGCATAACAACCTGCTGAGCTATGTGGACGGCAACGGCGCACTATGGC GACAAAGCTACGGTCCCTTTGACCTGCTCACCTCACGCACGGATGCACAGGAGCGTACCTGGCGTTACGAGTATGACAAA GAGAGCCAGCAGCTGGTCGCCGTTATCGCCCCAGACGGCAGCCGCTGGCAATGGTGGCTGGATGCCGATGCACGAGTTAT CCGCGAGCGGGATATGGCAGGGACCGACACCCACTACACCTACGACGAAGACGGCCACTGCATCGCCATCCGTAATGGCG AAGGCGAAACTCGTCACTTTCTGTATGACGGACGTGGGTTGCTCATTAAAGAAACTGCGCCGGACGATACCCAGTATTAC CGCTATGACGCCGCAGGCAGGCTGACCGAGGTCACCTCTACCACCAGTCACGTCCAGTTGGAATATGACCTCCGTGACCG GGTGGTGCGGGAGTGGCTGAACGGCACCTTGCTCACCCGACAGTTTGACGATACCGCACGCACTGTGACGCGGACACTGG TCTGGGAAAACGAGAGCGACAACGCGCTGGTCAGCGCCTTCAGCTACAGCGCGGCAGGTGAACTGCAACAGGTGCAGTTG CCGGACGGTGCGGAGCTCACCCTTGCCCATGATGCCGCCGGACGGGAATCGTCGCGTTCAGGCGGGGCGTTCGTCCAACA CCGCGAATATGACGTGATGGGCTGGTTGGCGCGCGAGATGAGCGGTCAGCAGCAGGACGGTCGACTCCATGCCACACAGA CAAAGGAATACCTGTACGACGGTGCGGGCAATCTGGCTGGCGTTCGCCACAATCGTGAAACCCGGGGCTACCGTCTGGAT GCCACCGGGCGGGTGCTGTCCGTCCTGAGCGGTGGCGCAGGACGGACGGTCGATACTGACGAAGCCTACCGCTATACACG CAACGGTCTGCCGCAGGAGACTTCCCGACTCACCGAATGGCAGGCGGGTAGGCTGACTCAGCACGACGATACCCATTACC AGTACGACAAAGCCGGGCGACTCATCCGTAAACAGGTGGTTCAGCCGGGCTACCGCCCACAGGTCTGGCACTATCGCTGG GACAGCCGTAACCAGCTCCGGGTTGTCGACACCCCGACGGGCGAACGCTGGTTCTACCGCTATGACCCGTTCGGACGGCG CACCGGCAAACGCTGTGAGCAGACACAGGACGATATCCGCTACCTGTGGGACGGCGACCAAATCGCCGAGGTACGGCATT ATCGCAACGGTAAACAGATTGCCCGTCGCCACTGGGTACACAACGGCTGGGAGCTGCTGGTTCAGCAACGGCAGAATACT GACGGACGCTGGGAAACCGATTTTGTCACCAGCAGCCAGAACGGTGAACCACAGGCCCTGTACAAACCCGACGGCACCCT GCGCTGGCAGGCACCGAAAAGCACCCTCTGGGGCCAGCGACCAGGCTCCACGGAAGACTCTGCCGACCCGGGACTTGCCT TTGCCGGACAGTACCGTGACAGCGAAAGCGGGCTATGTTATAACCGTTTTCGGTACTACGATCCGAATGGTGGATGCTAC GTCTCGCCTGACCCGATAGGGGTGCTGGGGGGAGAAAGTAATTATGCTTATGTGCCGAATCCCAATACATGGGTTGATCC GTTTGGGTTGGCTGGGTGTTCTAAAGAACTAGCTCAAAGAAAAGCACAAGAGCTTCGTGATAGTGCCACATCAAATACTC AACGAAGTAAGTTACCCAGAGCAACGTCTGCGGTAGTCGATAAGGCCACAGGTAAAGTTTATTATGGTTTCAGTGGGCGA CCTCTTCCTAGTACTATTCACCCTCATTTAGCAGAAAGAATGCCTAGTCCTAGCTTAGAAAGATGGCCGGTTCAAAACTG TGCAGAATTCAAAGGTGTCAATCAGGCTTTGCTGGATGGAGCTAGGTTAGAAAACCTGGAGGTTCATACAGTGAAGACTA TATCAGGTGAGGCATTTCCAATGTGTTCAAATTGCCAAACTACCATATTTGGTACGATAGTTACGAGTGGATAG Protein sequence : MLSDILNRVARVGAMHAGKGPTPPAERPQPGQGKAPTSPGKTIKHKSFLGALAGAIAGAVVAAVVFAAAAAVAGAIAVAV VGTGGMGAALVVGAVKLAVGFGAVSLLGGLISSVSSKVSAMVDSGSPPFGPVSSGSGTVFAEKQKISRAEVDTVACTKHN SPQLIAQGSETVYVNGSPAARIDDKTVCGATIKEGASTVFFGSGQQTCLKISDEFSWWEKALLIAVEFLVPPSRGMFKGL GKLFTRGPTAVLKGIRMGALRTAVGLRKAVRCASKGFKNNKGLARIKEATRGFLKDPVYIPSGNVIEMRQDIELGQTLPL LFERTYRSSSTHTGLLGRGWYDTWSETAQVSRDGLNTHVVITLAQGYDIDFTFHQDVQSVFCPLYPAFTLYRRAKGFSLW DRDSLTWREFDVPQGDRLLLSSIHDPHDNRITLIRDPKGYLRKIRHSDDIELLLVWRGESLHQIQRIDTGQKTLLAEYRQ DEQGRLIEADAAHAYHLFYDYDSENRLTRWHDNDQTWARYEYDYQGRCVYTTCADGYLTAHFEYLDDRVVMTDGLGQRSE FGFNALSLMSWEKSPLGRITRYDYDDHGNLLREISPAGRVVEFRYLDDSGLVSAFTDGSGHTWAYDYDEAQRLCGITDPL GRIWQWAFDETGNPEKLTGPDTREVRFTWNRHGLLTQVSDQAGEVQARLRYDHRQRLLSASDALGRTQQLRYDQQDRVVQ WQRPDGAQYRLGYRRASWKLPEQLVRPDEKEEKRQYDKHNNLLSYVDGNGALWRQSYGPFDLLTSRTDAQERTWRYEYDK ESQQLVAVIAPDGSRWQWWLDADARVIRERDMAGTDTHYTYDEDGHCIAIRNGEGETRHFLYDGRGLLIKETAPDDTQYY RYDAAGRLTEVTSTTSHVQLEYDLRDRVVREWLNGTLLTRQFDDTARTVTRTLVWENESDNALVSAFSYSAAGELQQVQL PDGAELTLAHDAAGRESSRSGGAFVQHREYDVMGWLAREMSGQQQDGRLHATQTKEYLYDGAGNLAGVRHNRETRGYRLD ATGRVLSVLSGGAGRTVDTDEAYRYTRNGLPQETSRLTEWQAGRLTQHDDTHYQYDKAGRLIRKQVVQPGYRPQVWHYRW DSRNQLRVVDTPTGERWFYRYDPFGRRTGKRCEQTQDDIRYLWDGDQIAEVRHYRNGKQIARRHWVHNGWELLVQQRQNT DGRWETDFVTSSQNGEPQALYKPDGTLRWQAPKSTLWGQRPGSTEDSADPGLAFAGQYRDSESGLCYNRFRYYDPNGGCY VSPDPIGVLGGESNYAYVPNPNTWVDPFGLAGCSKELAQRKAQELRDSATSNTQRSKLPRATSAVVDKATGKVYYGFSGR PLPSTIHPHLAERMPSPSLERWPVQNCAEFKGVNQALLDGARLENLEVHTVKTISGEAFPMCSNCQTTIFGTIVTSG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| rhs-core | AAN64198.1 | Rhs | Not tested | macrophage toxin pathogenicity island | Protein | 0.0 | 41 |
