Name : PC1_0688 (PC1_0688) Accession : YP_003016279.1 Strain : Pectobacterium carotovorum PC1 Genome accession: NC_012917 Putative virulence/resistance : Virulence Product : ECF subfamily RNA polymerase sigma-24 subunit Function : - COG functional category : K : Transcription COG ID : COG1595 EC number : - Position : 809654 - 810178 bp Length : 525 bp Strand : + Note : TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: eca:ECA0813 RNA polymerase sigma factor DNA sequence : GTGAAGAGTCCCGCCGCTGTCTGCCCCAATCAGCCTGAAACCTTAAACGTTCAGCAGATTTATCATGACCATCATGCCTG GTTACAGGCGTGGTTGCGTCGGCGTTTGGGGTGTTCACAGCAGGCTGCGGATCTGGCGCAGGATACGTTCCTACGTTTGA TCTGCCAGCCTCAGGGCGATCGTATCCGTGAACCGCGCGCCTGGTTGACGACCGTGGCGCATGGGCTGATGGTGAATCAC TGGCGGCGTAAAGATATCGAGAATGCTTACCTTCAGGTGCTGGCAGAGCAGGAATTTCATTTTGCTCCCTCGCTGGAGCA GCAGGCGATGGTGGTTGATGCGCTGTTAGCCATCGATCAGATGCTGGCGACGCTACCCGGCAAAGTGCGTCAGGCATTCT TGTTGGTGCATCTTGACGGTTTGACCTATCGACAGGTCGCTGAACAATTAGCCGTTTCCGAGCGGATGGTAAAAAAATAT ATGGCACAGGCGATGCTGAATTGTCTATTGTGTCAGGACTTATGA Protein sequence : MKSPAAVCPNQPETLNVQQIYHDHHAWLQAWLRRRLGCSQQAADLAQDTFLRLICQPQGDRIREPRAWLTTVAHGLMVNH WRRKDIENAYLQVLAEQEFHFAPSLEQQAMVVDALLAIDQMLATLPGKVRQAFLLVHLDGLTYRQVAEQLAVSERMVKKY MAQAMLNCLLCQDL |
Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
unnamed | AAL08458.1 | FecI | Virulence | SRL | Protein | 2e-31 | 44 |
Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
PC1_0688 | YP_003016279.1 | ECF subfamily RNA polymerase sigma-24 subunit | VFG1049 | Protein | 9e-32 | 44 |