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Name : secD (ECBD_3253) Accession : YP_003037438.1 Strain : Escherichia coli Escherichia coli BL21-Gold(DE3)pLysS AG Genome accession: NC_012947 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 3387488 - 3389302 bp Length : 1815 bp Strand : - Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCAC TGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTA AGTCTGTGGCACTGGAAGAGGGCGCTATTCTTGCGCGCTTCGACTCCACTGACACCCAGTTGCGCGCTCGTGAAGCATTA ATGGGCGTTATGGGTGACAAATACGTCGTGGCGCTTAACCTTGCCCCGGCAACGCCGCGCTGGCTGGCAGCTATTCACGC TGAGCCGATGAAGCTCGGCCTTGACCTGCGTGGCGGCGTTCACTTCCTGATGGAAGTGGATATGGACACCGCGCTTGGCA AACTCCAGGAACAAAATATCGATAGCCTACGCAGTGACCTGCGCGAAAAGGGCATCCCGTATACCACTGTTCGTAAAGAA AACAACTACGGCCTGAGCATCACTTTCCGCGATGCTAAAGCTCGTGATGAAGCCATTGCGTATCTGAGCAAGCGCCATCC GGACCTGGTGATTAGCAGCCAGGGCAGCAACCAGCTGCGTGCGGTAATGAGCGATGCTCGTCTGAGTGAAGCGCGTGAAT ATGCGGTGCAGCAGAACATTAATATCCTGCGTAACCGTGTAAACCAACTTGGCGTGGCGGAGCCGGTGGTTCAGCGTCAG GGTGCTGACCGTATCGTTGTTGAACTGCCAGGTATTCAGGACACTGCGCGTGCGAAAGAGATTCTGGGTGCGACGGCAAC GCTGGAATTCCGTCTGGTAAACACCAACGTTGACCAGGCCGCTGCGGCATCCGGTCGCGTACCGGGCGACTCTGAAGTGA AACAGACCCGCGAAGGTCAGCCAGTTGTGCTGTACAAACGCGTAATTCTGACCGGTGACCATATCACCGACTCCACTTCC AGCCAGGACGAATACAACCAACCGCAGGTTAACATCTCGCTCGATAGCGCTGGTGGTAACATCATGTCTAACTTCACTAA GGACAACATCGGCAAACCGATGGCAACCCTGTTTGTGGAGTACAAAGACAGCGGTAAGAAAGATGCAAATGGTCGTGCGG TTCTGGTGAAACAGGAAGAGGTGATTAACATCGCCAACATCCAGTCTCGTCTGGGTAACAGCTTCCGTATCACCGGCATC AACAACCCGAACGAAGCCCGTCAGCTGTCACTGCTGCTGCGTGCCGGTGCGTTGATCGCGCCGATTCAGATTGTTGAAGA ACGTACCATTGGCCCAACCCTGGGTATGCAGAACATTGAACAGGGGCTGGAGGCTTGCCTTGCCGGTCTGCTGGTTTCTA TTCTGTTCATGATCATCTTCTATAAGAAGTTTGGTCTGATTGCGACCAGTGCTCTGATTGCCAACTTGATCTTAATCGTC GGCATTATGTCGCTGTTGCCAGGCGCAACGCTGAGTATGCCAGGTATCGCGGGTATCGTCTTAACCCTTGCGGTGGCGGT CGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCAACGGACGTACTGTTCAACAGGCAATTGATGAAG GTTATCGTGGCGCATTCAGTTCTATCTTCGATGCGAACATCACCACGCTGATTAAAGTCATCATCCTGTACGCAGTGGGT ACCGGGGCAATTAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCG TGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAAGAAGCTGTCAATCTGA Protein sequence : MLIVVIVIGLLYALPNLFGEDPAVQITGARGVAASEQTLIQVQKTLQEEKITAKSVALEEGAILARFDSTDTQLRAREAL MGVMGDKYVVALNLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGIPYTTVRKE NNYGLSITFRDAKARDEAIAYLSKRHPDLVISSQGSNQLRAVMSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQ GADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAASGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTS SQDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITGI NNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIV GIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVG TGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 1e-118 | 48 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 5e-119 | 48 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 5e-119 | 48 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 5e-119 | 48 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 3e-119 | 48 |
