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Name : rpoB (PAU_00350) Accession : YP_003039188.1 Strain : Photorhabdus asymbiotica ATCC 43949 Genome accession: NC_012962 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase beta chain Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 375873 - 379901 bp Length : 4029 bp Strand : + Note : - DNA sequence : ATGGTTTACTCCTATACCGAGAAAAAACGTATTCGTAAGGATTTTGGTAAGCGTCCCCAAGTGTTGGACGTACCTTATCT CCTTTCTATCCAACTTGACTCGTTCCAGAAGTTTATCGAGCAAGATCCAGAAGGCCAGAATGGTTTAGAAGCAGCATTCC GTTCTGTATTCCCAATTCAGAGCTACAGCGGCAGTTCGGAGCTGCAATACGTGAGCTACCGTCTTGGTGAGCCAGTGTTT GATGTTAAAGAGTGCCAGATTCGCGGTGTAACTTATTCTGCACCTCTGCGCGTTAAATTGCGTCTGGTTATCTATGAACG TGAAGCACCGGAAGGCACGGTCAAAGACATTAAAGAACAAGAAGTCTACATGGGTGAAATTCCACTCATGACTGACAATG GTACTTTTGTTATCAACGGTACTGAAAGGGTTATTGTTTCCCAGTTACATCGTAGTCCTGGTGTATTCTTTGATAGCGAT AAGGGTAAAACACACTCATCCGGTAAGGTGCTGTATAACGCACGCATTATCCCTTACCGTGGTTCCTGGTTAGATTTCGA ATTTGATCCAAAAGATAACCTATTTGTACGTATTGACCGCCGTCGTAAATTGCCGGCAACTATTATTCTGCGTGCAATGG ATTACAGCACTGAAGAGATCTTGAATCTGTTCTTCAGTAAAACGATTTTCGAAATTCGTGACAACAGGCTGCAAATGACG CTGGTACCAGAACGTTTGCGCGGTGAAACTGCTTCTTTTGATATTGAAGCAAACGGCAAGGTTTATGTTGAAAAAGGCCG TCGTATTACCGCACGTCATATCCGCCAGTTAGAAAAAGACGACGTGAACCGTATTGAGGTTCCTGTTGAATACATCGCGG GTAAAGTTGTTGCAAGAGACTACATTGATGTCAATACAGGTGAAATTATCTGTGCTGCTAACATGGAACTCTCTTTGGAT CTGCTGGCACGTTTGAGTCAGGCTGGTCACAAATCTATCGAAACCTTGTTCACCAACGACTTAGATCATGGTGCGTATAT TTCCGAGACACTACGTGTTGATCCAACCAATGACCGCTTGAGTGCTTTGGTTGAGATTTATCGCATGATGCGTCCTGGCG AGCCGCCAACCCGTGAAGCGGCAGAAAATCTGTTTGAAAATCTGTTCTTCTCAGAAGATCGCTATGATCTTTCTGCGGTT GGTCGTATGAAGTTCAACCGTTCACTGAGCCGGGAAGAAGTTGAAGGCTCTGGTATTCTGAGTAAAGATGACATTATTGA TGTCATGAAAAAACTCATTGATATCCGTAATGGTAAAGGTGAAGTCGACGATATTGACCACTTAGGTAACCGTCGTATCC GTTCCGTTGGGGAAATGGCAGAAAACCAGTTCCGTGTTGGTTTGGTACGTGTTGAGCGCGCAGTTAAAGAGCGTCTGTCT CTGGGTGATTTGGATACTCTGATGCCTCAGGACATGATCAACGCTAAGCCGATTTCAGCCGCAGTGAAAGAATTCTTTGG TTCTAGCCAGCTGTCTCAGTTTATGGACCAAAACAACCCGCTTTCTGAAATTACCCACAAACGCCGTATTTCTGCGTTGG GCCCAGGTGGTTTGACTCGTGAGCGTGCGGGCTTCGAAGTGCGTGACGTACATCCAACTCACTATGGCCGTGTATGTCCA ATCGAAACCCCGGAAGGTCCGAACATCGGCCTGATTAACTCATTGTCGGTTTATGCACAGACTAACGAGTATGGTTTCCT TGAAACCCCATACCGTTTGGTTCGTGACGGCGTTGTAACTGATGAAATTCATTATCTGTCTGCGATTGAAGAAGGTAACT TCGTTATCGCGCAGGCAAACACCGTATTAGATGATGAAGGCCACTTTGTTGAAGATCTGATAACTTGCCGTAACTTTGGT GAATCTAGCTTATTCAACCGTGAACAAGTTGAATATATGGACGTTTCTACCCAGCAAGTGGTTTCGGTTGGTGCTTCCTT GATCCCATTCCTAGAACATGATGACGCAAACCGTGCATTGATGGGTGCAAACATGCAACGTCAGGCTGTTCCTACTCTGC GTGCTGATAAGCCGTTGGTTGGTACAGGCATGGAACGGGCGGTAGCGGTTGACTCAGGGGTAACTTCTGTAGCTAAACGC GGTGGTGTGGTTCAGTACGTTGATGCATCTCGTATCGTTATCAAAGTAAACGAAGATGAAATGTATCCGGGTGAAGCAGG TATTGATATCTATAACCTGACTAAATACACCCGTTCTAACCAGAACACCTGTATTAACCAAATGCCGTGTGTTTCTTTGG CTGAACCAGTAGAACGCGGTGATGTACTGGCTGATGGGCCATCCACTGATTTGGGTGAGTTGGCACTGGGTCAGAACATG CGCGTGGCGTTCATGCCATGGAATGGTTATAACTTCGAGGACTCTATCTTAGTTTCTGAGCGTGTTGTTCAGGAAGATCG CTTTACAACCATTCATATTCAGGAATTGGCTTGTGTATCTCGTGATACCAAATTAGGGCCTGAAGAGATCACCGCTGACA TCCCTAACGTGGGTGAAGCTGCACTCTCCAAATTGGATGAATCCGGTATTGTTTATATTGGTGCAGAAGTGACCGGCGGC GACATTCTGGTTGGTAAAGTGACACCTAAAGGTGAAACCCAACTGACACCAGAAGAAAAACTACTGCGTGCTATCTTCGG TGAGAAAGCGTCTGATGTTAAAGACTCTTCTCTGCGCGTACCAAATGGCGTATCCGGTACGGTTATCGACGTACAGGTAT TTACCCGTGACGGAGTAGAAAAAGATAAGCGTGCTCTGGAAATTGAAGAGATGCAATTGCGTCAGGCTAAGAAAGACCTG ACAGAAGAGTTGCAAATTTTTGAAGCAGGGTTGTTCGCGCGTATCCGTTCTGTACTGGTTTCTGGTGGTATAGAAGCTGA AAAACTTGACAAACTACCTCGTGAGCGTTGGTTGGAACTGGGGCTGGCTGATGAAGAGAAACAGAATCAGTTAGAACAGT TGGCTGAACAGTATGACGAACTGAAAGCTGAGTTCGAGAAAAAACTGGATGCTAAACGTCGTAAGATCACTCAGGGCGAT GATCTGGCACCTGGCGTACTGAAAATCGTTAAAGTTTATCTGGCGGTTAAACGTCAAATTCAGCCTGGTGATAAGATGGC AGGTCGCCATGGTAACAAGGGTGTTATCTCCAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGCACTCCGG TAGATATCGTACTGAACCCACTGGGCGTACCATCACGTATGAACATTGGTCAGATCCTGGAAACTCACTTGGGCATGGCT GCGAAAGGTATTGGTGACAAGATCAATGCAATGCTGAAACAACAGCAGGAAGTTGCCAAACTGCGTGAATTTATCCAGAA AGCTTATGACTTGGGTGATGAAACCCGTCAGAAAGTTGATCTGAACACTTTCTCTGATGAAGAAGTTCTTCGTCTGGCAG AAAACCTGAAAAAAGGCATGCCAATTGCGACACCGGTGTTTGACGGTGCGAAAGAGAAAGAAATTAAAGAGCTGCTAAAA CTGGGTGACTTACCAACTTCTGGTCAGATTACTCTGTTTGATGGTCGTACCGGTGAACAATTCGAACGTCAGGTTACCGT TGGTTACATGTATATGTTGAAACTGAATCACTTGGTGGATGACAAGATGCACGCTCGTTCAACCGGTTCGTATAGCTTGG TTACCCAGCAACCGCTGGGTGGTAAAGCGCAGTTCGGTGGTCAACGCTTCGGTGAGATGGAGGTGTGGGCATTGGAAGCA TATGGTGCTGCATACACCTTGCAGGAGATGCTCACCGTCAAGTCCGACGATGTTAACGGCCGTACCAAGATGTATAAAAA CATCGTGGATGGCAACCACCAGATGGAACCAGGTATGCCGGAATCCTTTAACGTATTGTTGAAAGAGATCCGCTCTCTGG GTATCAACATCGAGCTGGAAGACGAGTAA Protein sequence : MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQNGLEAAFRSVFPIQSYSGSSELQYVSYRLGEPVF DVKECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSD KGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRAMDYSTEEILNLFFSKTIFEIRDNRLQMT LVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVNRIEVPVEYIAGKVVARDYIDVNTGEIICAANMELSLD LLARLSQAGHKSIETLFTNDLDHGAYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAV GRMKFNRSLSREEVEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCP IETPEGPNIGLINSLSVYAQTNEYGFLETPYRLVRDGVVTDEIHYLSAIEEGNFVIAQANTVLDDEGHFVEDLITCRNFG ESSLFNREQVEYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTSVAKR GGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLAEPVERGDVLADGPSTDLGELALGQNM RVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGG DILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLRQAKKDL TEELQIFEAGLFARIRSVLVSGGIEAEKLDKLPRERWLELGLADEEKQNQLEQLAEQYDELKAEFEKKLDAKRRKITQGD DLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMA AKGIGDKINAMLKQQQEVAKLREFIQKAYDLGDETRQKVDLNTFSDEEVLRLAENLKKGMPIATPVFDGAKEKEIKELLK LGDLPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEA YGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 71 |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 71 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_003039188.1 | DNA-directed RNA polymerase beta chain | CP001138.1.gene4362. | Protein | 0.0 | 96 |
| rpoB | YP_003039188.1 | DNA-directed RNA polymerase beta chain | NC_002695.1.914942.p | Protein | 0.0 | 96 |
| rpoB | YP_003039188.1 | DNA-directed RNA polymerase beta chain | CP000034.1.gene3741. | Protein | 0.0 | 96 |
| rpoB | YP_003039188.1 | DNA-directed RNA polymerase beta chain | CP001918.1.gene250.p | Protein | 0.0 | 95 |
| rpoB | YP_003039188.1 | DNA-directed RNA polymerase beta chain | CP004022.1.gene2794. | Protein | 0.0 | 95 |
| rpoB | YP_003039188.1 | DNA-directed RNA polymerase beta chain | CP000647.1.gene4402. | Protein | 0.0 | 95 |
| rpoB | YP_003039188.1 | DNA-directed RNA polymerase beta chain | NC_002516.2.881699.p | Protein | 0.0 | 73 |
| rpoB | YP_003039188.1 | DNA-directed RNA polymerase beta chain | NC_010400.5987325.p0 | Protein | 0.0 | 71 |
| rpoB | YP_003039188.1 | DNA-directed RNA polymerase beta chain | NC_009085.4918494.p0 | Protein | 0.0 | 71 |
| rpoB | YP_003039188.1 | DNA-directed RNA polymerase beta chain | NC_010611.6233925.p0 | Protein | 0.0 | 71 |
| rpoB | YP_003039188.1 | DNA-directed RNA polymerase beta chain | NC_011595.7060572.p0 | Protein | 0.0 | 71 |
| rpoB | YP_003039188.1 | DNA-directed RNA polymerase beta chain | NC_010410.6003841.p0 | Protein | 0.0 | 71 |
| rpoB | YP_003039188.1 | DNA-directed RNA polymerase beta chain | NC_011586.7046027.p0 | Protein | 0.0 | 71 |
| rpoB | YP_003039188.1 | DNA-directed RNA polymerase beta chain | CP000675.2.gene392.p | Protein | 0.0 | 69 |
| rpoB | YP_003039188.1 | DNA-directed RNA polymerase beta chain | NC_008702.1.4609796. | Protein | 0.0 | 66 |
| rpoB | YP_003039188.1 | DNA-directed RNA polymerase beta chain | NC_011035.1.6448762. | Protein | 0.0 | 64 |
| rpoB | YP_003039188.1 | DNA-directed RNA polymerase beta chain | CP002695.1.gene18.p0 | Protein | 0.0 | 64 |
