Gene Information

Name : JDM1_2294 (JDM1_2294)
Accession : YP_003063878.1
Strain : Lactobacillus plantarum JDM1
Genome accession: NC_012984
Putative virulence/resistance : Resistance
Product : antimicrobial peptide ABC transporter ATPase
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 2459125 - 2459826 bp
Length : 702 bp
Strand : -
Note : -

DNA sequence : 
ATGGCATACATCGAAGTGCAGCAGGCAACGCGCCAGTTTAAAAATGGTGAGCAGGTCACCGTTGCTAATCGTGATATTTC
ATTTGAAGTTGACCAGGGAGCGGTCGTTGTGATTTTAGGCCCGAGTGGTGCGGGTAAGTCCACGTTACTCAATATTTTAG
GTGGCATGGACAGCCCTACGAGCGGCCGTGTACTGGTGGATAGTGTGGACATTGCGCAATTCAACTCACGGCAATTAACG
ACCTATCGCCGGCAAGCGGTCGGGTTCGTTTTTCAATTCTACAACCTGGTTCCGAACTTGACGGCGCGTGAAAATGTCGA
GTTGGCGTCGCAAATCACCAAGGATGCACGCGACGTTGATGAGACGTTGGCCATGGTAGGACTGACGCACCGGGCAGATA
ACTTTCCAGCCCAGTTGTCCGGTGGTGAACAACAGCGGGTCGCAATTGCGCGGGCAGTTGCGAAGAATCCCAAATTATTA
CTCTGTGATGAACCCACTGGCGCGCTCGACTATCAGACGGGGAAGCAAGTCTTACAGGTGATTCAAGATGCAGCTAAGCA
GACGCAGACAACGGTCATCATTGTGACGCATAATAGTGCGATTGCGCAGCTGGGTGACCAAGTCATTCGTATCAATGATG
CTCAAGTGCAGTCGGTTGAGCATAATGCTCATCCAACGCCTTTGGCTGAGATTAAATGGTAG

Protein sequence : 
MAYIEVQQATRQFKNGEQVTVANRDISFEVDQGAVVVILGPSGAGKSTLLNILGGMDSPTSGRVLVDSVDIAQFNSRQLT
TYRRQAVGFVFQFYNLVPNLTARENVELASQITKDARDVDETLAMVGLTHRADNFPAQLSGGEQQRVAIARAVAKNPKLL
LCDEPTGALDYQTGKQVLQVIQDAAKQTQTTVIIVTHNSAIAQLGDQVIRINDAQVQSVEHNAHPTPLAEIKW

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-32 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
JDM1_2294 YP_003063878.1 antimicrobial peptide ABC transporter ATPase NC_012469.1.7685735. Protein 2e-69 62
JDM1_2294 YP_003063878.1 antimicrobial peptide ABC transporter ATPase CP001581.1.gene798.p Protein 2e-41 42
JDM1_2294 YP_003063878.1 antimicrobial peptide ABC transporter ATPase NC_012469.1.7686878. Protein 5e-37 42