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Name : Phep_0849 (Phep_0849) Accession : YP_003091133.1 Strain : Pedobacter heparinus DSM 2366 Genome accession: NC_013061 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : - Position : 997921 - 1001724 bp Length : 3804 bp Strand : + Note : PFAM: RNA polymerase Rpb2, domain 2; RNA polymerase Rpb2, domain 3; RNA polymerase beta subunit external 1 domain; RNA polymerase Rpb2, domain 6; RNA polymerase Rpb2, domain 7; TIGRFAM: DNA-directed RNA polymerase, beta subunit DNA sequence : TTGGCAAATAAAGTCGACCAAAGAGTAAATTTTGCACGTAGTAAGCATATTATAGATTACCCGGATTTTCTAGATGTGCA GTTGCAATCATTCAGAGAATTTTTTCAGATAGAAACCACTTCGGATAACCGTCATACAGAGGGTTTATTTAAGGTATTTG CTGAAAATTTTCCAATCACAGATTCCAGAAACATCTTTGTTTTGGAATTCCTTGATTATTTTATTGACCCGCCGCGTTAT GATATACCTGAGTGTATTGACCGTGGGTTAACTTATAGTGTTCCGTTGAAAGCTAAATTAAAGCTTTCGTGTAATGATGC TGAGCACGAAGATTTTGAAACCATTATTCAGGATGTGTATTTAGGGACCATACCTTATATGACCCCAAAAGGTACATTTG TGATTAACGGAGCAGAGCGTGTAATTGTTTCACAATTGCACAGGTCGCCAGGTGTGTTCTTCGGCCAAAGCCGCCACACA AATGGAACTAAATTGTACTCAGCCCGTGTAATTCCTTTTAAGGGTTCATGGATCGAGTTTGCTACAGACGTAAACAACGT GATGTATGCTTACATTGATCGTAAGAAAAAGTTCCCGGTTACCACCTTATTGCGTGCTATTGGTTACGATTCTGATAAGG ACATTTTGGAGCTGTTCGATCTTGCCGATGAGGTAAAGGTCAGCAAATCCGGCTTGAAAAAATATATCGGGCGTAAGCTT GCAGCAAGAGTATTGAGGAAGTGGGTAGAGGATTTTGTAGATGAAGATACTGGTGAGGTAGTTTCAATAGATCGTAATGA AGTGATCTTAGACAGGGATACTGTATTGGAAGACGACCACATTGATATGATCATTGATGCTGGTGTGAAGACGATCATCT TATCTAAGGATGATGGTGCTAGCCAGGCTGATTATACCATTATATATAATACTTTACAAAAGGATACATCTAACTCTGAA AAAGAGGCTGTTGAAAACATCTATCGTGCTTTGCGTAATGCAGAACCACCTGATGAGGAAACTGCAAGAGGTATCATTGA GCGTTTGTTCTTTTCGGATAAACGTTATGACTTGGGTGATGTGGGCAGGTACCGCATTAACCGTAAGTTGAAAATGGATA CTCCCGATCATGTAAAAGTTTTAACGAAGGCTGATATCATTGCCATTGTTAAGTACCTGATCAAACTGATCAACTCTAAA GAAGAGGTGGATGATATTGATCACTTGTCGAACCGTCGTGTTCGTACAGTAGGTGAGCAATTGTACGCTCAGTTTGGTGT TGGTCTGGCACGTATGGCAAGAACCATCCGTGAGCGTATGAACATCCGAGATAACGAGGTATTTACACCAACTGATCTGA TCAATGCCCGTACTTTATCATCGGTGATCAATTCATTTTTTGGTACAAACCAGTTGTCACAGTTCATGGACCAGACGAAT CCTTTGGCAGAGATTACGCACAAACGTCGTTTGTCGGCCTTAGGCCCAGGTGGTCTGTCGCGTGAGCGTGCAGGTTTCGA GGTACGTGACGTTCACTATACGCACTATGGCCGTTTGTGTACAATTGAAACGCCAGAGGGACCAAACATTGGTTTGATTT CTTCTTTGTGTGTTCATGCGAAGATCAATAATTTAGGTTTCATTGAAACTCCTTATAAGAAAGTAGAGAACGGTATTGTT TCGGTTGATGAACCGGTGATTTACTTATCTGCTGAGGATGAAGATGGTAAAACCATTGCGCAGGCAAATGCAGCTTATGA TGATAAAGGTAATTTCACCACTTCACGTGTAAAAGCACGTTATGAAGGTGACTTCCCGGTTATTGAACCAGAGAAACTGG ACTTAATGGACGTGGCGCCGAATCAGATTACTTCAATTGCAGCTTCCTTGATTCCTTTCCTTGAGCATGATGATGCGAAC AGGGCCTTGATGGGATCGAACATGCAACGTCAGGCCGTACCATTGTTACGTCCTGAGGCTCCTATCGTTGGTACAGGTTT GGAAGGTCGGGTAGCCCGCGATTCAAGAACGCTGATTAACGCTGAGGGTGACGGTGTGGTGGAATACGTTGATGCAAATG AGATCACCATTAAATATGTGCGTAATGACAGTGATCGTTTAGTTTCTTTTGAAGGTGACAGTAAAACCTATAAGTTAATC AAATTCAAAAAAACCAATCAGAATACCTGTATCAATTTAAAGCCAATTGTTAAAAAAGGCCAGAAGGTTGTAAAAGGACA GGTGTTGTGTGAAGGTTATGCTACTGAAAATGGTGAGTTGGCATTGGGAAGAAACTTAAAAGTTGCTTTCATGCCTTGGC AGGGATATAACTTTGAGGATGCGATTGTAATCAGTGAGCGTATTGTCCGTGAAGATATCTTTACTTCTTTACACATCGAA GAGTTTGAGCTGGAAGTACGCGATACCAAACGTGGGGAAGAGGAATTGACTCCAGATATTCCTAACGTTTCTGAGGAAGC AACTAAGGATCTTGACGAGAACGGTATCATCCGTATCGGTGCTGAAGTGAAAGAAGGTGATATCCTTATTGGCAAGATTA CCCCTAAGGGAGAATCTGATCCTTCACCGGAAGAGAAGTTGTTGCGTGCTATATTTGGAGATAAGGCAGGAGATGTTAAA GATGCATCTTTGAAAACCCCTCCATCTATCAGGGGTGTGGTAATTGATACCAAATTGTTCTCAAGAGCTAAGAAAACTAC TAAAGCAGAAGAAAAATCTGCAATAGAAAAACTAGATAAGAAATATGATCTGGCTGTTTTAAACCTTAAGAATGAGCTTG TAGATAAATTGTTCCAGATTGTGAACGGTAAAACGTCGCAGGGGGTATACAATGTTTATAAAGAGCTATTGTTCCCTAAA GGTGCGAAATTTACGCAGAAAAGCTTATCAGACCTTGAATACGCACACATCAATCCATACAAATGGACTACTGATGACGA CAAGAATGAGCAGATCAAAATGTTGTTGCACAACTACGGTATTCGTGTAAACGAGGAGCTGGGTGCTTACAAACGTGATA AATTTGCCATTAGTGTTGGTGATGAACTTCCATCTGGTATTGTACAGATGGCCAAGGTTTATGTTGCCAAGAAACGTAAG TTAAAAGTAGGGGATAAGATGGCCGGACGTCACGGTAACAAGGGTATTGTAGCCCGTATTGTTCGTGATGAAGATATGCC ATTCCTTGAAGACGGAACACCTGTTGATATTGTGTTGAACCCACTGGGTGTACCTTCACGTATGAACTTAGGTCAGATCT ATGAAACTGTACTGGCATGGGCAGGTAAAGAATTGGGTGTAAAATTTGCTACTCCGATTTTTGATGGTGCCAAACATGAC GAAGTAGAGGATTGGATCGCTAAGGCAGGAGTACCTGCTTCGGGCAGAACTTATTTACATAATGGTTTAACGGGTGAGAA ATTTGACCAGCCAACAACTGTAGGTATCATCTACATGTTGAAATTGGGGCACATGGTTGATGATAAGATGCACGCCCGTT CAATCGGACCATACTCATTGATTACACAGCAGCCATTGGGTGGTAAAGCCCAGTTTGGTGGTCAGCGTTTTGGTGAGATG GAGGTTTGGGCATTGGAAGCATTTGGTGCGGCCAATATCCTGCAAGAGATCTTAACCGTTAAGTCGGATGATGTGATCGG AAGGGCCAAAACCTATGAAGCGATTGTAAAAGGCGAGAACCTTCCTACTCCAGGTGTACCGGAATCATTTAATGTATTGG TACATGAGTTACGTGGATTAGGTTTAGATATTACGTTAGACTAA Protein sequence : MANKVDQRVNFARSKHIIDYPDFLDVQLQSFREFFQIETTSDNRHTEGLFKVFAENFPITDSRNIFVLEFLDYFIDPPRY DIPECIDRGLTYSVPLKAKLKLSCNDAEHEDFETIIQDVYLGTIPYMTPKGTFVINGAERVIVSQLHRSPGVFFGQSRHT NGTKLYSARVIPFKGSWIEFATDVNNVMYAYIDRKKKFPVTTLLRAIGYDSDKDILELFDLADEVKVSKSGLKKYIGRKL AARVLRKWVEDFVDEDTGEVVSIDRNEVILDRDTVLEDDHIDMIIDAGVKTIILSKDDGASQADYTIIYNTLQKDTSNSE KEAVENIYRALRNAEPPDEETARGIIERLFFSDKRYDLGDVGRYRINRKLKMDTPDHVKVLTKADIIAIVKYLIKLINSK EEVDDIDHLSNRRVRTVGEQLYAQFGVGLARMARTIRERMNIRDNEVFTPTDLINARTLSSVINSFFGTNQLSQFMDQTN PLAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCTIETPEGPNIGLISSLCVHAKINNLGFIETPYKKVENGIV SVDEPVIYLSAEDEDGKTIAQANAAYDDKGNFTTSRVKARYEGDFPVIEPEKLDLMDVAPNQITSIAASLIPFLEHDDAN RALMGSNMQRQAVPLLRPEAPIVGTGLEGRVARDSRTLINAEGDGVVEYVDANEITIKYVRNDSDRLVSFEGDSKTYKLI KFKKTNQNTCINLKPIVKKGQKVVKGQVLCEGYATENGELALGRNLKVAFMPWQGYNFEDAIVISERIVREDIFTSLHIE EFELEVRDTKRGEEELTPDIPNVSEEATKDLDENGIIRIGAEVKEGDILIGKITPKGESDPSPEEKLLRAIFGDKAGDVK DASLKTPPSIRGVVIDTKLFSRAKKTTKAEEKSAIEKLDKKYDLAVLNLKNELVDKLFQIVNGKTSQGVYNVYKELLFPK GAKFTQKSLSDLEYAHINPYKWTTDDDKNEQIKMLLHNYGIRVNEELGAYKRDKFAISVGDELPSGIVQMAKVYVAKKRK LKVGDKMAGRHGNKGIVARIVRDEDMPFLEDGTPVDIVLNPLGVPSRMNLGQIYETVLAWAGKELGVKFATPIFDGAKHD EVEDWIAKAGVPASGRTYLHNGLTGEKFDQPTTVGIIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEM EVWALEAFGAANILQEILTVKSDDVIGRAKTYEAIVKGENLPTPGVPESFNVLVHELRGLGLDITLD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 46 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Phep_0849 | YP_003091133.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 46 |
| Phep_0849 | YP_003091133.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 46 |
| Phep_0849 | YP_003091133.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 46 |
| Phep_0849 | YP_003091133.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 46 |
| Phep_0849 | YP_003091133.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 46 |
| Phep_0849 | YP_003091133.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 46 |
| Phep_0849 | YP_003091133.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 46 |
| Phep_0849 | YP_003091133.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 46 |
| Phep_0849 | YP_003091133.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 46 |
| Phep_0849 | YP_003091133.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 45 |
| Phep_0849 | YP_003091133.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 45 |
| Phep_0849 | YP_003091133.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 45 |
| Phep_0849 | YP_003091133.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 45 |
| Phep_0849 | YP_003091133.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 44 |
| Phep_0849 | YP_003091133.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 43 |
| Phep_0849 | YP_003091133.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 43 |
| Phep_0849 | YP_003091133.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 43 |
