Gene Information

Name : Afer_0125 (Afer_0125)
Accession : YP_003108767.1
Strain : Acidimicrobium ferrooxidans DSM 10331
Genome accession: NC_013124
Putative virulence/resistance : Virulence
Product : microcompartments protein
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4577
EC number : -
Position : 135922 - 136233 bp
Length : 312 bp
Strand : +
Note : PFAM: microcompartments protein; KEGG: tbd:Tbd_2645 carboxysome shell protein CsoS1A

DNA sequence : 
ATGGCAACAGGGGTGAGCGGCATCGCGCTCGGCATGATCGAGACTCGCGGTCTCGTGCCGGCGATCGAGGCAGCGGACGC
GATGACGAAGGCGGCGGAGGTGCGCCTCGTCGGTCGTCAGTTCGTCGGTGGCGGCTACGTCACGGTGTTGGTTCGGGGTG
AGACCGGCGCGGTGAACGCAGCCGTGCGTGCGGGTGCGGACGCGTGCGAGCGGGTCGGCGACGGCCTCGTGGCGGCACAC
ATCATCGCTCGGGTGCACTCCGAGGTGGAGAAGATCCTTCCTGACGGCGAGGACATGGGCGCTGGGGCGTAG

Protein sequence : 
MATGVSGIALGMIETRGLVPAIEAADAMTKAAEVRLVGRQFVGGGYVTVLVRGETGAVNAAVRAGADACERVGDGLVAAH
IIARVHSEVEKILPDGEDMGAGA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42077.1 hypothetical protein Not tested PAI II 536 Protein 2e-11 56
unnamed CAD42078.1 hypothetical protein Not tested PAI II 536 Protein 2e-11 52
unnamed CAD42079.1 hypothetical protein Not tested PAI II 536 Protein 2e-10 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Afer_0125 YP_003108767.1 microcompartments protein VFG1596 Protein 1e-11 56
Afer_0125 YP_003108767.1 microcompartments protein VFG1597 Protein 1e-11 52
Afer_0125 YP_003108767.1 microcompartments protein VFG1598 Protein 8e-11 49