|
Name : Cpin_1710 (Cpin_1710) Accession : YP_003121407.1 Strain : Chitinophaga pinensis DSM 2588 Genome accession: NC_013132 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : - Position : 2051104 - 2054913 bp Length : 3810 bp Strand : + Note : KEGG: DNA-directed RNA polymerase, beta subunit; K03043 DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 7; RNA polymerase Rpb2 domain 3; RNA polym DNA sequence : ATGTCTCTAAAAAAAGCCCAAGCAAACGAAAGAGTAAATTTTGGAAAGATCAAACAAGTTACTGAGACACCGGATCTGTT GGCTATCCAAATCCAATCTTTCAAGGATTTCTTCCAGTTAGAAACCACACCAGACAAACGTAACAATGAAGGCCTTTTTA AAGTATTCAAGGAGAACTTCCCGATTACAGATACCCGCAATATCTTCAATCTGGAGTTTCTGGACTACTTTGTAGACCCT CCGCGATATACGATAGAGGAATGTATTGAACGTGGGCTTACCTATTCTGTACCGCTGAAGGCTAAATTGCGCCTGAGCTG TAACGATGAGGAACACGTTGACTTCCAGACGATTGTGCAGGATGTATTCCTCGGGAATATACCCTACATGACGCCTAGAG GTACATTCGTGATTAACGGCGCAGAGCGCGTGGTAGTATCGCAGCTCCACCGTTCTCCTGGTGTATTCTTCGGACAATCC ATACATCCAAACGGTACGAAAATCTACTCTGCAAGGGTGATTCCGTTCAAAGGGGCCTGGATGGAGTTTGCAACCGACAT TAACAATGTAATGTACGCTTACATCGACCGTAAGAAGAAGTTCCCTGTAACTACCCTTCTGCGTGCGATCGGCTACGAGA CAGATAAAGATATCCTCCAGCTCTTCGGAATGGCTGACGAGGTGAAAGCAGATAAGAAGAGCCTGGAAAAATACGCCGGT AAGAAGCTGGGTGCACGTGTACTCAGAAGCTGGGTGGAAGATTTCGTAGATGAAGATACCGGTGAGGTGGTGAGCATTGA ACGTAATGAGATCATGCTTGAGCGTGATAGTATCCTCGATGAAGCGAATATCGAAACCATCGTGGATATGGGCGTGAAAA GTGTGTTCGTGCAGAAAGAAGAGGTGAGCGGCGACTTCTCAATTATCTACAATACTTTAAATAAAGATACATCTAACTCC GAACTGGAAGCTGTTCAGCACATCTACCGCCAATTGCGTGGTGCCGATGCGCCGGATGATGAAACAGCAAGGGGTATCAT CGATAAATTGTTCTTCTCTGACAAGCGTTATGACCTCGGGGATGTTGGTCGTTATAAGATCAACAGAAAACTCGGTCTGC CTACGCCTCTCAACATGAAAGTGTTGACCAAAGAAGACATCATCGCGATCATTAAGTACCTGGTACAGCTCACCAACAGT AAAGCGGAGATCGATGATATCGATCACCTGAGTAACCGTAGGGTGCGTACCGTGGGCGAACAGTTATATGCGCAGTTTGG TGTTGGTCTGGCTCGTATGGCCCGTACCATCCGTGAGAGAATGAACGTTCGCGATAACGAGGTATTTACGCCGGTAGATC TGATCAATGCAAGAACACTTTCTTCTGTAATCAACTCCTTCTTCGGTACCAGCCAGCTGAGCCAGTTCCTGGATCAGACT AACCCGCTGTCTGAGATCACGCACAAGCGTCGTATCTCCGCCCTCGGTCCCGGCGGTCTTAGCCGTGAAAGAGCAGGTTT CGAGGTGCGTGACGTACACTATAGCCACTACGGCCGTCTCTGTACGATCGAAACACCGGAAGGTCCGAACATCGGTCTGA TCTCTACTCTTTGCGTACACGCGAAAGTAAACGACATGGGCTTTATCGAAACACCTTACCGTAAGGTGAATGAAGGTAAA GTAGACATGGATAATGTACGATTCCTGAGCGCTGAAGAAGAAGATTCCGTGAAGATCGCACAGGCGAACGCACCACTCGA TGAAGAAGGTCACTTTGTAAATGATAAGGTGAAATCCCGTGAAACCGGTGACTTCCCTATCCTGGACAGAGAAGAAGTGG AATACATGGACGTTGCACCTAACCAGATCGTAGGTCTGAGTGCTTCCCTGATTCCGTTCCTCGAGCATGATGACGCCAAC CGTGCGTTGATGGGATCGAACATGCAACGTCAGGCAGTACCATTGATCAACCCACAGGTGCCTATCGTAGGTACTGGTCT GGAAGGAAAGGCTGCACGCGACTCCCGTCTGCAGATCACTTCTGAAGGTAAAGGTGTGGTTGAATTCGTGGATGCAAACG AAATTCATGTTCGTTACGAGCGTGATGAAATGCAGAAACTGGTTTCCTTTGAGGATGACCTGAAAATATACCAGCTGACC AAATTCGTTAAAACCAACCAGAGCACCTGTATCAACCTGCGTCCAGCAGTGAAGAAAGGGCAGCAGCTCGTGTTTGGCGA CTTCCTGACAGAAGGTTACGCTACACGTGGTGGTGAATTGGCACTGGGTCGTAACATGAAAGTGGCGTTCATGCCATGGA AAGGTTACAACTTCGAGGATGCGATCGTAATCTCTGAGCGTGTAGGACGTGAAGACCTCTTCACCTCTATCCACATCGAT GAATACGAACTGGAAGTACGTGATACTAAACTGGGTGAAGAAGAACTGACACCAGATATTCCAAACGTAAGTGAGGAAGC AACGAAAGATCTGGATCAGAACGGTATCATCCGTGTTGGTGCACACATCAAAGAAGGTGACATCCTGATCGGTAAGATCA CTCCTCGTGGTGAATCTGATCCTTCTCCTGAAGAAAAACTGCTCCGTGCGATCTTCGGTGACAAGGCTTCTGATGCGAAA GATGCATCCCTGAAGGCACCTCCAAGCACAGAAGGTGTGGTAATCGACAAGAAATTGTTCAGCCGCGCTAAGAAAGATAA AAACTCTAAGACCCGTGAAAAAGCGGCGCTGGAGAAACTGGAAAAAGTACACCAGAAGAATGAAGAAGACCTGCTGGAAG TACTCATGGGTAAATTGCTGACACTCCTGAAGGATAAAACTTCTCAGGGTATCACCAACACTTACGGTGAAGTACTGATC TCCAAAGGATCTAAATTCTCTTCCAAGAACCTGGCGAACATCGACTTCCAGAACGTGAATCCGCTCGGCTGGACTACCGA CGAGGTAACCAACGATCAGATCAACACACTGTTGCACAACTACAACATCAAGTACAATGAAGAACTCGGACGTTACAAAC GTGAGAAGTTCAACATCTCAATTGGTGATGAGTTACCAGCTGGCGTACTGAAACTGGCTAAGGTTTACCTGGCTAGCAAA CGTAAGCTGAAAGTGGGTGATAAGATGGCGGGTCGTCACGGTAACAAGGGTATCGTTGCGAAGATCGTTCGTGATGAAGA TATGCCATTCCTGGAAGACGGTACACCGGTAGATATCGTACTGAACCCATTGGGCGTACCTTCCCGTATGAACCTTGGTC AGATTTACGAAACTGTACTGGGTTGGGCTGGTCTGAAACTGGGTGTAAGATTTGCGACACCTATCTTCGACGGTGCTACT ACTGAAGAAATAGCTGAATATATCGACGAAGCTGGTTTACCAAGCTTTGGCCATACTTATCTGTATGATGGCGAAACCGG TGAGCGTTTCCACCAGAAAGCTACCGTGGGTGTTATCTACATGCTGAAACTGAGCCACATGGTTGATGACAAAATGCACG CCCGTTCTATCGGACCGTACAGTCTCATTACACAACAGCCGTTGGGTGGTAAGGCGCAGTTCGGTGGTCAGCGTTTTGGT GAGATGGAGGTGTGGGCACTGGAAGCATATGGTGCATCCAATATCCTGCAGGAACTGTTAACCATTAAGTCTGATGACAT TGTAGGCCGTGCCAAAGCATATGAGTCTATCGTTAAAGGCGATAACATACCAAAAGCAGGCGTACCGGAGTCCTTCAATG TATTGATACATGAACTTCGCGGTCTGGGTCTGGATTTGAAATTTGATTAA Protein sequence : MSLKKAQANERVNFGKIKQVTETPDLLAIQIQSFKDFFQLETTPDKRNNEGLFKVFKENFPITDTRNIFNLEFLDYFVDP PRYTIEECIERGLTYSVPLKAKLRLSCNDEEHVDFQTIVQDVFLGNIPYMTPRGTFVINGAERVVVSQLHRSPGVFFGQS IHPNGTKIYSARVIPFKGAWMEFATDINNVMYAYIDRKKKFPVTTLLRAIGYETDKDILQLFGMADEVKADKKSLEKYAG KKLGARVLRSWVEDFVDEDTGEVVSIERNEIMLERDSILDEANIETIVDMGVKSVFVQKEEVSGDFSIIYNTLNKDTSNS ELEAVQHIYRQLRGADAPDDETARGIIDKLFFSDKRYDLGDVGRYKINRKLGLPTPLNMKVLTKEDIIAIIKYLVQLTNS KAEIDDIDHLSNRRVRTVGEQLYAQFGVGLARMARTIRERMNVRDNEVFTPVDLINARTLSSVINSFFGTSQLSQFLDQT NPLSEITHKRRISALGPGGLSRERAGFEVRDVHYSHYGRLCTIETPEGPNIGLISTLCVHAKVNDMGFIETPYRKVNEGK VDMDNVRFLSAEEEDSVKIAQANAPLDEEGHFVNDKVKSRETGDFPILDREEVEYMDVAPNQIVGLSASLIPFLEHDDAN RALMGSNMQRQAVPLINPQVPIVGTGLEGKAARDSRLQITSEGKGVVEFVDANEIHVRYERDEMQKLVSFEDDLKIYQLT KFVKTNQSTCINLRPAVKKGQQLVFGDFLTEGYATRGGELALGRNMKVAFMPWKGYNFEDAIVISERVGREDLFTSIHID EYELEVRDTKLGEEELTPDIPNVSEEATKDLDQNGIIRVGAHIKEGDILIGKITPRGESDPSPEEKLLRAIFGDKASDAK DASLKAPPSTEGVVIDKKLFSRAKKDKNSKTREKAALEKLEKVHQKNEEDLLEVLMGKLLTLLKDKTSQGITNTYGEVLI SKGSKFSSKNLANIDFQNVNPLGWTTDEVTNDQINTLLHNYNIKYNEELGRYKREKFNISIGDELPAGVLKLAKVYLASK RKLKVGDKMAGRHGNKGIVAKIVRDEDMPFLEDGTPVDIVLNPLGVPSRMNLGQIYETVLGWAGLKLGVRFATPIFDGAT TEEIAEYIDEAGLPSFGHTYLYDGETGERFHQKATVGVIYMLKLSHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFG EMEVWALEAYGASNILQELLTIKSDDIVGRAKAYESIVKGDNIPKAGVPESFNVLIHELRGLGLDLKFD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 45 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Cpin_1710 | YP_003121407.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 45 |
| Cpin_1710 | YP_003121407.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 45 |
| Cpin_1710 | YP_003121407.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 45 |
| Cpin_1710 | YP_003121407.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 45 |
| Cpin_1710 | YP_003121407.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 45 |
| Cpin_1710 | YP_003121407.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 45 |
| Cpin_1710 | YP_003121407.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 45 |
| Cpin_1710 | YP_003121407.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 45 |
| Cpin_1710 | YP_003121407.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 45 |
| Cpin_1710 | YP_003121407.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 45 |
| Cpin_1710 | YP_003121407.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 45 |
| Cpin_1710 | YP_003121407.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 45 |
| Cpin_1710 | YP_003121407.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 45 |
| Cpin_1710 | YP_003121407.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 45 |
| Cpin_1710 | YP_003121407.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 45 |
| Cpin_1710 | YP_003121407.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 44 |
| Cpin_1710 | YP_003121407.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 43 |
