|
Name : Svir_38530 (Svir_38530) Accession : YP_003135624.1 Strain : Saccharomonospora viridis DSM 43017 Genome accession: NC_013159 Putative virulence/resistance : Virulence Product : ATP-dependent chaperone ClpB Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 4169491 - 4172112 bp Length : 2622 bp Strand : - Note : PFAM: C-terminal, D2-small domain, of ClpB protein; ATPase family associated with various cellular activities (AAA); ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent chaperone ClpB DNA sequence : ATGGACGCTTTCAACCCGACCACGAAAACGCAGCAAGCGATCTCATCGGCGGCGCAGGCCGCCACCATGGCGGGTAACCC GGAGATCTCGCCCGCGCATCTGCTGGGCGCGTTGCTGTCCCAAAGCGACGGATTGGCCGCGCCGCTGCTCACCGCGGCCG GGGCCGATCCCGGCGCCGTCCGCAAGGAACTGGAGTCGGTCATCTCGACTCTGCCCTCGGCCACGGGAGCCACCGTCTCG TCGCCGCAGTTCGACACGTACGCGGTGAAGTCGTTGACCCACGCCCAGAAGTTGGCGACGGAGATGGGCGACGAGTACGT CTCCACCGAACACGTCCTCGTCGGACTGGCCGCCGAGGGCGGTCCGGTCGCGGACCTGCTCAAGCGTCAGGGAGCCACGC CGGAGACGCTCCGGGATGCGTTCACCAAGGTCCGGGGTTCGGCGCGGGTCACCACCCCGGATCCGGAAGGGACGTATCAG GCCCTGGAGAAGTACGGTGTCGACCTGACGGAACGGGCCCGGGCCGGTGAGCTGGACCCGGTGATCGGCAGGGACAGCGA GATCCGCCGGGTCGTGCAGGTGTTGTCCCGGCGCACCAAGAACAACCCCGTGCTCATCGGTGAGCCCGGTGTCGGCAAGA CCGCCATCGTGGAGGGGCTCGCGCAGCGCATCGTGGCCGGTGACGTGCCCGAATCGCTGCGGGGCAAGCGCGTGGTGGCG CTCGACGTCGGTTCGATGGTGGCGGGCGCGAAGTACCGCGGGGAGTTCGAGGAGCGGCTCAAGGCCGTGCTGAAGGAGAT CAAGGAATCCGACGGACAGGTCGTCACGTTCATCGACGAGCTGCACACGATCGTCGGTGCCGGCGCGACCGGTTCCGGGG ACTCCTCGCTCGACGCGGGCAACATGATCAAGCCGATGTTGGCGCGGGGCGAGCTGCGCATGGTCGGCGCGACGACGCTC GACGAGTACCGCGAGCACATCGAGAAGGACGCCGCACTGGAACGGCGGTTCCAGCAGGTGTTCGTCGGGGAGCCGTCGGT GGAGGACACCGTCGGTATCCTGCGCGGGCTCAAGGAGCGGTACGAAGTGCACCACGGTGTGCGCATCACCGACGCCGCGT TGGTGGCGGCGGCGACGCTGTCCGACCGCTACATCACCGCCCGCTTCCTGCCCGACAAGGCCATCGACCTGGTGGACGAG GCCGCGTCCCGGCTGCGCATGGAGATCGACTCACGCCCCGTCGAGATCGACGAGGTGGAGCGGGCCGTGCGCCGCATGGA GATCGAGGAGATGGCGCTGTCCAAGGAGGACGATCCGGCCTCGAAGGAGCGGCTGGAGGCGTTGCGCGCTGAGCTGGCCG AGAGGCGGGAGAAGCTGAACGCGCTCATGGCCCGGTGGCAGAACGAGAAGAGCGCCATCGAACGTGTCCGCGGACTGAAG GAGCAGCTCGAGCAGTTGCGCGGAGAGGCGGAACGGGCCGAACGGGACGCCGACCTGGGTCGGGCGGCCGAGCTGCGGTA CGGCCGTATCCCCGCGCTGGAGAAGGAGCTGGAGAAGGCCATCCGCGACACCGAGTCGGACCCCTCCGGCGAGAACATGG CCGACGTGATGCTGAAGGAGGAGGTCGGCGCGGACGACGTCGCCGACGTGGTGAGCGCGTGGACGGGGATCCCGGCGGGC CGACTGCTGGAAGGCGAGACCGGCAAGCTCCTGCGGATGGAGGAGGAACTCGGCAAGCGGGTCGTCGGCCAAAGCGACGC CGTGAAGGTGGTCTCCGACGCGGTGCGCAGGGCACGCGCCGGGGTCGCCGACCCGGACCGGCCCACGGGTTCGTTCCTCT TCCTCGGCCCCACGGGTGTCGGTAAGACCGAGTTGGCGAAGGCGCTGGCCGAGTTCCTGTTCGACGACGAGCGCGCGATG CTGCGCATCGACATGAGCGAGTACAGCGAGAAGCACTCGGTGGCCAGGCTCGTGGGCGCGCCCCCCGGTTACGTCGGTTA CGACCAGGGTGGCCAGCTCACCGAGTCGGTGCGCAGGCGGCCGTACTCGGTGGTGTTGCTGGACGAGGTGGAGAAGGCGC ACCCGGATGTCTTCGACGTGTTGCTGCAGGTGCTCGACGACGGCAGGCTCACCGACGGCCAGGGCCGTACGGTCGACTTC CGCAACACGATCCTGGTGCTCACCTCCAACCTCGGTTCGCAGGTCATCGCCGATCCCACGCTGTCCGAACAACAGCGCAA GGACTCGGTGATGTCGGTCGTGCAGCAGCACTTCAAGCCGGAGTTCCTCAACCGGCTCGACGACATCGTGGTGTTCCACG CGCTCGACACCGAGCACCTCGGCGCGATCGTGGACATCCAGGTCGGCCGGTTGGCGAAGCGGTTGGCGCAGCGCAGGTTG ACTCTCGACGTCACTCCGGCGGCCCGCGAGTGGCTGGCGATGAACGGCTACGACCCGATCTACGGGGCCCGTCCGTTGCG TCGGCTGGTGCAGTCGGCCATCGGGGACGAGCTGGCCAAGAAACTGCTGGCCGGAGAGATCAAGGACGGGGACACCGTGC GGGTCGACGTGCCGGAATCCGACACCGGGGCCAAGACGCTGCGGATCTCGCGGGCCGAATGA Protein sequence : MDAFNPTTKTQQAISSAAQAATMAGNPEISPAHLLGALLSQSDGLAAPLLTAAGADPGAVRKELESVISTLPSATGATVS SPQFDTYAVKSLTHAQKLATEMGDEYVSTEHVLVGLAAEGGPVADLLKRQGATPETLRDAFTKVRGSARVTTPDPEGTYQ ALEKYGVDLTERARAGELDPVIGRDSEIRRVVQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVAGDVPESLRGKRVVA LDVGSMVAGAKYRGEFEERLKAVLKEIKESDGQVVTFIDELHTIVGAGATGSGDSSLDAGNMIKPMLARGELRMVGATTL DEYREHIEKDAALERRFQQVFVGEPSVEDTVGILRGLKERYEVHHGVRITDAALVAAATLSDRYITARFLPDKAIDLVDE AASRLRMEIDSRPVEIDEVERAVRRMEIEEMALSKEDDPASKERLEALRAELAERREKLNALMARWQNEKSAIERVRGLK EQLEQLRGEAERAERDADLGRAAELRYGRIPALEKELEKAIRDTESDPSGENMADVMLKEEVGADDVADVVSAWTGIPAG RLLEGETGKLLRMEEELGKRVVGQSDAVKVVSDAVRRARAGVADPDRPTGSFLFLGPTGVGKTELAKALAEFLFDDERAM LRIDMSEYSEKHSVARLVGAPPGYVGYDQGGQLTESVRRRPYSVVLLDEVEKAHPDVFDVLLQVLDDGRLTDGQGRTVDF RNTILVLTSNLGSQVIADPTLSEQQRKDSVMSVVQQHFKPEFLNRLDDIVVFHALDTEHLGAIVDIQVGRLAKRLAQRRL TLDVTPAAREWLAMNGYDPIYGARPLRRLVQSAIGDELAKKLLAGEIKDGDTVRVDVPESDTGAKTLRISRAE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 4e-93 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Svir_38530 | YP_003135624.1 | ATP-dependent chaperone ClpB | VFG2076 | Protein | 4e-98 | 42 |
