Gene Information

Name : Jden_0218 (Jden_0218)
Accession : YP_003160195.1
Strain : Jonesia denitrificans DSM 20603
Genome accession: NC_013174
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 233185 - 233880 bp
Length : 696 bp
Strand : +
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tbd:Tbd_1760 lipoprotein releasing system, ATP-binding protein

DNA sequence : 
ATGACAAGTAATGTTGTGTTGCAGGCGTCAGGGTTACGCCGAACACTTCACTTGCCGGGAGGTTCGCAACTCCCCATTCT
TCGTGGGGTGGATCTAACCGTCTACGCTGGTCAGTCGCTTGCTATTGTGGGTCGATCAGGGTCAGGGAAAACGACCCTTC
TCTCCCAACTGGGTTTGCTGTCACCGCCTGATGACGGGGTGCTGACCATTCTCGATAAGAAGACCAATGAATTAAGTGAT
TCGGCGCGTGCGGCATTACGCAATGCCTCCCTTGGTTACATTTTCCAGTCGTATTCACTTGTCCCGCATTTCACAGCGCG
TCGAAATGTTGAACTCCCGATGCGATACGCGACCCGGGTTTCGCGGTTGGACAGGAAGGAACGTGTCTCTCACGTTCTTG
AGCTGGTTGGACTCGCTGAGCGCGCACAGTCAAAACCGCGGCATCTATCTGGGGGAGAGCAGCAGCGTGTTGCTATAGCG
CGGGCCCTCGTGCACAATCCTGCGCTGATCCTTGCTGACGAACCCACTGGGGCGCTTGACACGACAACAGCTGATACTGT
GCTCGACATTCTCCAACGGGCAACTCAAGCGCAAGGCGCCGCACTGATTGTTGTTACCCATGACCCTGCCATCGCGAACC
GTATGGACAGGCGGGCCGTCATGCATGACGGCAAGCTCACTGAGGAGTGTGGATGA

Protein sequence : 
MTSNVVLQASGLRRTLHLPGGSQLPILRGVDLTVYAGQSLAIVGRSGSGKTTLLSQLGLLSPPDDGVLTILDKKTNELSD
SARAALRNASLGYIFQSYSLVPHFTARRNVELPMRYATRVSRLDRKERVSHVLELVGLAERAQSKPRHLSGGEQQRVAIA
RALVHNPALILADEPTGALDTTTADTVLDILQRATQAQGAALIVVTHDPAIANRMDRRAVMHDGKLTEECG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-23 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Jden_0218 YP_003160195.1 ABC transporter NC_008702.1.4606598. Protein 1e-29 46
Jden_0218 YP_003160195.1 ABC transporter NC_012469.1.7686878. Protein 4e-30 42
Jden_0218 YP_003160195.1 ABC transporter NC_012469.1.7685735. Protein 1e-23 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Jden_0218 YP_003160195.1 ABC transporter VFG2059 Protein 4e-10 42