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Name : Jden_2251 (Jden_2251) Accession : YP_003162189.1 Strain : Jonesia denitrificans DSM 20603 Genome accession: NC_013174 Putative virulence/resistance : Unknown Product : HsdR family type I site-specific deoxyribonuclease Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : - Position : 2440126 - 2443260 bp Length : 3135 bp Strand : + Note : KEGG: bte:BTH_I2740 type I restriction-modification system endonuclease; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: protein of unknown function DUF450; type III restriction protein res subunit; SMART: DEAD-like helicase DNA sequence : GTGAGCGTGTTCAACGAGAACACTGTCGAGCTGGCGGCGTTGGAGTACTTCGCGGAGCTGGGCTACCGCACGCTGCATGG GCCGGATATCGCTCCTGGTGAGCCGGGAGCGGAGCGCGACTCCTATGAGGAGGTGTTCTTGTGGGGGCGTCTGCGTGATG CGATCAGGCGGATCAATCCGGGGACTTCTCCTGCCCTTGTCGATGAGGCGATCAAGCGGGTGCGTCGGGCGGAATCGCAA AGCCCGATCGACGAGAACTACCGGCTGCACCAGCTCATCACGGAGGGTGTGCCTGTCGAGCATCGGGATGCAGACGGTGC GCTGCGGACGACGCGGTTGTGGCTGGTCGACTTCGAGCGCCCCGAGAACAACGACTGGGTGGCGATTAATCAGTTCACGA TCGTCGAGAACGGCAAGAACCGTCGGCCGGACGTGCTGGTGCTGGTCAACGGTCTCCCACTGGCCCTGCTGGAGTTGAAG AACCCGACGGCGGAGCACGCGACGCTGAAGTCGGCGTGGAACCAGGTGCAGACGTACCGGCAGGACATCCCGTCGGTGTT CGTGCCGAATGCCGTGACGGTGATCACGGACGGCACCTCGGCGGCGATGAGCAGCTACGCAGGCGCGTTCGAGCACTACG CCCCGTGGAAGACCATCGAGGGCCGCGAGGTGGTCAGCGACGGCCCGGCGCTTGAGGTGCTTATCAAGGGGGTGTTCGAG CCGAAGCGGTTCCTCGATCTGTTGCAGAACTTCATCGTCTTCAGCGACGAGACCGCGACCGACAAGGCCACCGGGCAGCC GACGCGGTTGCTCGTGAAGCGTGTGGCGAAGTACCACCAGTACTGGGCGGTGAACGCGGCGGTCGAGTCGACCGTGCAGG CGTCCCGTCCGGACGGCGATCGTCGTGGTGGTGTGGTCTGGCATACCCAAGGTTCGGGCAAGAGCTTCGAGATGGTCTTC TATGCCGCGAAGATCATGCGCGATTCCCGGATGGCGAATCCGACGCTGGTGTTCATCACTGACCGCAACGACCTGGACGA CCAGCTCTTCGGGGAGACGTTCGCCCCGGCACGCATCCTGCCGGAGACCCCGGTGCAGGCCACAACGCGTACTGACCTGC GCTCGAAGTTGAAGCGTGCATCGGGTGGCATCGTCTTCACGACGCTGCAGAAGTTCGCTCCCGGTGAGGACGGCGATGCC AACCCGGTGCTGACGGATCGTTGCAACGTCGTCGTCGTGGCCGATGAGGCGCATCGCAGCCAGTACGGCTTCGGCGAGAC GCTGGACCGTCATGGCCGCTTGCGCGCAGGTCTGGCGAAGCACATGCGAGATGCTTTGCCTGGTGCTACCTACCTCGGCT TCACCGGTACACCGATCGAGTCAGGTGACAAGTCCACCCGCTCGGTGTTCGGTGACTACGTCGACGTCTATGACCTCACG CGTGCGGTCGAGGACGGAGCGACGGTGAAGATATTCTATGAGTCACGTCTCGCCAAGATCGACCTGTCTGACGATGACCT TGCCGCGCTCGACGAACTGGCGGACGAGATCACCGAGACCGTCGAGGAGGACGCAGCGACGGCGGCGAAGTCCCGTTGGT CGCGTCTGGAAGCCATCGTCGGCGCCGACTCACGCCTCGACCTCATCGCCCGGGACATCGTCGAGCACTGGGAGAAGCGG CGCGAGGCGCTGTTCGGCAAGGGCATGATCGTCACGATGAGCCGCCGGATCGCGGTGCGGCTCTACGAGAAGATCGTCGC GCTTCGCCCTGACTGGCATTCGGACGATCCCGCCAAGGGCAAGATAAAAGTCGTCATGACCGGCTCGGCAGCGGACCCCG CCGAGTTCCAGCCACACATCTATCCCAAGGACGTCCGCAAGGATCTCAAGCTCCGGGCGAAGAACCCCGATGACGAGCTC GAACTCGTCATCGTCCGCGACATGTGGCTGACCGGCTTCGACGCGCCGTCCATGCACACGATGTACGTCGACAAGACCAT GCAGGGTGCCGGGCTCATGCAGGCCATCGCCCGCGTCAATCGCACCTTCCGGGACAAGCCCGGCGGGCTCATCGTCGACT ACATCGGCGTGTTCGCGAACCTCCAGGCGGCGCTCCAGGAGTACTCGCCCTCCGACCGTGACCAGGCCGGCGTACCGATC GACGAGATGGTCGCCGTCATGCTGGAGAAGCACGACATCATCCGGGGACTGCTGCACGGCGTCGACTACGACTCCTCGCC GACACTCACTGCTTCCCAGCGCCTGGCGGAGTACGCCAAGGTGCTCGACTTCGTCATGGCCGACCCCGACCGCACGAAGC GCTTCAACGACCAGGTGCTGGCGCTAGCCAAGGCGTTCGCGCTGGCTGGAGCGCGCGACGAGGCCGCGGCTATCCGCGAC GATGTGCGGCTATTCACCGACGTGCGTGCAGCCATCTTGAAGATCCAGAACCCCGACTCCGGTCGTGGCGGCTCCGGCGC TGTCGAGATCGACACCGCGCTGGGGCAGCTGCTCAACGAGGCGGTAGCCGCCAACCAGGTCGTCGACATCTACAAGCTCG CCGGTGTTGAGACACCAGAGCTGTCGATCCTGAGCGACGAGTTCCTCGACTCGCTCGCGGACAAGGACAAGCCCAACCTG CAGATGGGGTTGCTGCGTCGGCTCCTCAACGACCAGATCCGTACTGTACAGCGCACCAACCTTGTGCAGGCACGGAAGTT CTCCGAACTGCTCGACGAGGCGATCAATCGGTATACGAACCGGTCGCTGACGACTGCGGAGATCATCGCTGAACTGGTGA AGCTTGCCAAGCAGATGCGCGACGACCAGAAGCGTAACGAGGAGCTGGGGCTTTCTGCCGCGGAGGTCGCGCTGTACGAC GCGATCGCCCAGAACGACGCCGCGGTCATGCACATGGGCGATGAGACATTGAAGAAGATCGCTGTCGACCTCGTCTGGGC TGTCCGTACCAGCGTTGTCATCGACTGGGATCAGAAGGAGAGCGTCCGCGCCGCGATGCGCTCGAAGGTGCGACGCCTGC TTGCCAAGTACGACTACCCACCTGATGCCGAGAAGAAGGCCATCGAGTTGGTGCTCGAACAAGCCGAACTGTTCGCGCGT GGAGGAGCAGAGTAA Protein sequence : MSVFNENTVELAALEYFAELGYRTLHGPDIAPGEPGAERDSYEEVFLWGRLRDAIRRINPGTSPALVDEAIKRVRRAESQ SPIDENYRLHQLITEGVPVEHRDADGALRTTRLWLVDFERPENNDWVAINQFTIVENGKNRRPDVLVLVNGLPLALLELK NPTAEHATLKSAWNQVQTYRQDIPSVFVPNAVTVITDGTSAAMSSYAGAFEHYAPWKTIEGREVVSDGPALEVLIKGVFE PKRFLDLLQNFIVFSDETATDKATGQPTRLLVKRVAKYHQYWAVNAAVESTVQASRPDGDRRGGVVWHTQGSGKSFEMVF YAAKIMRDSRMANPTLVFITDRNDLDDQLFGETFAPARILPETPVQATTRTDLRSKLKRASGGIVFTTLQKFAPGEDGDA NPVLTDRCNVVVVADEAHRSQYGFGETLDRHGRLRAGLAKHMRDALPGATYLGFTGTPIESGDKSTRSVFGDYVDVYDLT RAVEDGATVKIFYESRLAKIDLSDDDLAALDELADEITETVEEDAATAAKSRWSRLEAIVGADSRLDLIARDIVEHWEKR REALFGKGMIVTMSRRIAVRLYEKIVALRPDWHSDDPAKGKIKVVMTGSAADPAEFQPHIYPKDVRKDLKLRAKNPDDEL ELVIVRDMWLTGFDAPSMHTMYVDKTMQGAGLMQAIARVNRTFRDKPGGLIVDYIGVFANLQAALQEYSPSDRDQAGVPI DEMVAVMLEKHDIIRGLLHGVDYDSSPTLTASQRLAEYAKVLDFVMADPDRTKRFNDQVLALAKAFALAGARDEAAAIRD DVRLFTDVRAAILKIQNPDSGRGGSGAVEIDTALGQLLNEAVAANQVVDIYKLAGVETPELSILSDEFLDSLADKDKPNL QMGLLRRLLNDQIRTVQRTNLVQARKFSELLDEAINRYTNRSLTTAEIIAELVKLAKQMRDDQKRNEELGLSAAEVALYD AIAQNDAAVMHMGDETLKKIAVDLVWAVRTSVVIDWDQKESVRAAMRSKVRRLLAKYDYPPDAEKKAIELVLEQAELFAR GGAE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| api52 | CAF28526.1 | hsdr-like Type I restriction enzyme | Not tested | YAPI | Protein | 0.0 | 45 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 44 |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 44 |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 44 |
