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Name : rpoB (DAMO_0532) Accession : YP_003205449.1 Strain : Candidatus Methylomirabilis oxyfera Genome accession: NC_013260 Putative virulence/resistance : Unknown Product : RNA polymerase subunit beta Function : - COG functional category : - COG ID : - EC number : 2.7.7.6 Position : 463375 - 467391 bp Length : 4017 bp Strand : + Note : Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme DNA sequence : ATGGCCCTCGTGAAAAAGAGCGTGGCTGCTGAGCGCTGGAATTTCAGCAAGATCAAAGAGGTGATCTCTATCCCCAATCT GATTGAGATCCAGCGGCGGTCCTTCGATCAATTTTTACAAATGAAGGTTCCGCCGCACGCACGCGAGGAGATCGGTCTTC AGGGGGCCTTCGCCAGCATCTTTCCGATCTATAACTACGACCAGTCGGCGTCGCTTGATTTTGTGAAGTACGAGTTCGGG GCGCCAAAGTACCGGGCAGAGGAATCGCTGGAGAAGGGGATGACGTACTCCGTCCCGCTCAAGGTGACCCTTCGCTTGAT GGTGTGGGATAAGCCGGTCGGCTCCGAGGCCGGCAGTATCAGGGACATTAAAGAGCAGGAGGTCTACCTGGGCGAAATGC CTTTGATGACGCCTCAGGGCACCTTTATCATTAATGGAACGGAGCGGGTGGTGGTCAGCCAATTGCACCGCTCTCCAGGC GTCTTTTTTGATCATGACAGCGGTAAGACTCACCCGAGCGGTAAGATCCTGTACTCCGCTCGTCTTATCCCGTATCGCGG TTCCTGGCTGGAATTCGAATTCGATGCGAATGACGTACTGTATGTCCGGGTAGACCGAAGGCGAAGGTTTCTGGCCTCGA TCCTGCTACGAGCCATCGGCTATGGGAGTAATGAGGAGATCCTGAACCTTTTCTACGAGCGGGATATGTTACGCATCGAG AAGGGGAAGGAAATCCTGATTCATGTGGGTTCACGTGGCGCGACCAGTTTTCGGGCGAGTAAGGATATTCCCGATCCCCA AACTAAGCAACTGATCCTTGGGACGGCTAAGCGCATCACGAAGACGGCTCAGAAGCGACTCCAGGCACTGAAGATCACGG AGATATCGCTGTATAAAGAGGATCTCATCGGACGAATTGCAGCCGCTGATATTGTGAATACGGCAAGCGGTGAGGTCATC CTTGAATGTGCGCAGGAGATTACGGCAGAAGCGCTGGAGCGAATGCTGAGCAGCGGAACGGCCAGCTTCGCCGTACTGGC CAGCCTGGACGGTCGGGAAACGTTTGAGATCCGGGAGAGCATCATTCGCGACTCGACCCGCTCCGAGAAGGATGCCTTGA CCGAGATGTACCGGAGAATGCGACCCGGTGATCCGCCCAATGAGGAAGCCACCAAGGCATTCCTCGAGTCCATCTTCTTT AATCCAAAGCGCTATGACCTGTCCAAGGTCGGACGCCTGAAGATCAATCGCAAGCTTGGCCTCGACGTACCCCTTGAGGT GCATGCCCTCATGTGCCGTCGATATCGACCGAGCGGTATGGAGACACGGATAGGTCAGATAGACGACGTCGTAGAGGCTA TCCGATACCTCCTCAGGCTGAAGCACGGAGAAGCCGGGACCTCCGTCGATGATATCGACCATCTGGGCAATCGTCGAGTC CGATCGGCCGGAGAACTCCTGGAGGAACAGTTTCGGATCGGATTAGCTCGAATGGAACGGGCGGTTCGAGAGCGAATGAG TACACAGGAGTTGGAGACCCTGATGCCGCACGATCTGGTGAATGCCAAGCCGGTGACGGCGGCGCTGAAGGAGTTTTTCG GCAGCTCCCAGCTTTCTCAGTTTATGGATCAGACCAACCCGCTGGCCGAGTTGACTCACAAGCGGCGGCTGTCGGCCTTA GGCCCTGGAGGGCTGTCTCGGGAGCGGGCGGGGTTTGAGGTCCGGGACGTACACCCGACTCACTATGGTCGGATGTGTCC TATCGAAACGCCGGAGGGTCCTAACGTCGGTCTTATTGCCAGTCTGTCCACCTATGCCCGCGTGAATGATTTCGGCTTTA TCGAGACCCCGTATCGCAAGGTTCGGGATGGTGTTGTGACCGACGAGATCGAGTATCTGACCGCCGACGAAGAGGAGAAG TATACGATCGCGCAGGCCAACGCGGAGTTGGACGGACGGGGTCGGTTCACCTCAGATCGAATCTCGGCGCGAACCGGCGG CAACTTCGTCACGGTTCCCCCGATGAATGTTGAGTACATGGATGTTGCCCCGAAGCAACTGGTTGGGGTGTCTACGTCGC TGGTCCCGTTCCTCGAACACGATGACGCCAATCGCGCCCTGATGGGCGCCAACATGCAACGCCAAGCGGTCCCTCTCCTA CGGCCGGAAGCCCCCGTAGTCGGCACCGGAATGGAATATCCCGCGGCGCGGGATTCCGGGACCGTTGTAACGGCCCGGCG TGGCGGGATCGTCGAATCGGTGACCGCCGACCGGATCATTGTCCGCGCTTCGGACGGCAAAGGCGAAGAGGGCGAAGACG ATACGGGGGTGGACATCTACTCCCTGGTGAAGTTTCGTCGCAGCAACCAGAATACCTGCCTCACACAGAAGCCGATTGTG AGCAAAGGGGAGCGGATCACGAGGGGTCAGGTTATTGCCGACGGGCCGGCGACGCAGAACGGCGAACTGGCGCTCGGACA AAACGTGATGGTCGCGTTCATGCCATGGGGTGGGTATAACTTTGAGGACGCGATTCTGATCAGCGAGCGGTTGGTGAAGG ATGATCGCTATACCTCTATTCACATCGAGGAGTTCGAGATCGAGGCGCGTGAGACCAAACTGGGAAAAGAGGAGATCACG CGCGATACCCCGAATGTGGGCGAGGATGCGCTCAAAGATCTCGACGAAAGCGGGATCGTCCGGATCGGAGCCGAGGTAAA GCCAGGGGATATCCTGGTGGGGAAGGTGACTCCCAAAGGTGAAACCGTACTGACTCCGGAAGAGCGACTGCTGCGTGCCA TCTTTGGCGAGAAGGCCGAGGACGTGCGGGATGCCTCGCTGTATGTTCCGCCAGGGATCTGCGGCACCGTCGTCGACGTC AAGGTCTTCTCGCGAAAAGGGGTTGAGAAGGATGAGCGGGCCAAGTCGATTGAAGACGAAGAGGTCAGTCGACTCCGCAA GGACTTCGAAGATGAGATTAGTATCATTGCTGCGGATCGGGATAGGAAGCTGCGTTCCCTCCTCGATGGTATAGACGTTA GCAGAGAGATCCGGAGCAGGATTACGCGTAAGATCGTGGTTTCAAAAGGGAAGACATTAACCGGCGAGATGCTGGATAAG CTGTCCCATGAGCAGTTAGTAGATCTCGCCGGGCGATTGGACGAAGAGTTGGGTCAGAAAGCGAGCAGAATCGGCGACGC AGCGGATAATCAGGTCCACGTCCTGCAGACGCTCCTGGAGGAGCGAATCAGCAGAGCAACCCGAGGGGATGAGCTTGCTC CTGGGGTCTTTAAGATGGTGAAGGTCTACGTGGCCATGAAACGAAAGCTCTCTGTCGGTGATAAGATGGCCGGCCGACAT GGGAACAAGGGTGTGATCGCGAAGGTTCTGCCTGAGGAAGATATGCCTTACCTACCTGACGGGACACCCGTTGAGGTAGT CTTGAATCCGCTGGGCGTGCCTTCCCGAATGAACGTCGGTCAGATTCTGGAGACCCACCTCGGCTGGGCGGCGGGAGCTC TGGGGCTGCGGGTCGCCTCGCCGGTCTTTGATGGGGCCAAAGAGCAAGAGATTAAGGTCTGGCTCAAGCGAGCCAAGCTC CCAGTTTCAGGGAAGACCGTTCTCTACGACGGACGTACCGGTAAGCCGTTCCACCAGGAGGTGACGGTCGGCTATATCTA CCTTATGAAGCTGGCCCATCTTGTAGATGACAAGATTCACGCTCGATCCATTGGGCCCTACTCGTTGATTACTCAGCAAC CTCTGGGGGGCAAGGCCCAATTCGGTGGACAGCGATTCGGCGAGATGGAGGTGTGGGCGTTGGAGGCGTATGGGGCCGCG CATACCCTGCAAGAGATTCTGACCGTAAAGTCGGATGATGTCGTCGGACGAACCAAGATGTATGAGTCGATTGTTCGAGG CGACTGTACGCTCGATCCGGGGCTTCCTGAATCGTTCAATGTTCTGGTTAAAGAGCTGCAAAGTTTGGCGCTGGATGTTG AGCTGAAGAAGGAGTAG Protein sequence : MALVKKSVAAERWNFSKIKEVISIPNLIEIQRRSFDQFLQMKVPPHAREEIGLQGAFASIFPIYNYDQSASLDFVKYEFG APKYRAEESLEKGMTYSVPLKVTLRLMVWDKPVGSEAGSIRDIKEQEVYLGEMPLMTPQGTFIINGTERVVVSQLHRSPG VFFDHDSGKTHPSGKILYSARLIPYRGSWLEFEFDANDVLYVRVDRRRRFLASILLRAIGYGSNEEILNLFYERDMLRIE KGKEILIHVGSRGATSFRASKDIPDPQTKQLILGTAKRITKTAQKRLQALKITEISLYKEDLIGRIAAADIVNTASGEVI LECAQEITAEALERMLSSGTASFAVLASLDGRETFEIRESIIRDSTRSEKDALTEMYRRMRPGDPPNEEATKAFLESIFF NPKRYDLSKVGRLKINRKLGLDVPLEVHALMCRRYRPSGMETRIGQIDDVVEAIRYLLRLKHGEAGTSVDDIDHLGNRRV RSAGELLEEQFRIGLARMERAVRERMSTQELETLMPHDLVNAKPVTAALKEFFGSSQLSQFMDQTNPLAELTHKRRLSAL GPGGLSRERAGFEVRDVHPTHYGRMCPIETPEGPNVGLIASLSTYARVNDFGFIETPYRKVRDGVVTDEIEYLTADEEEK YTIAQANAELDGRGRFTSDRISARTGGNFVTVPPMNVEYMDVAPKQLVGVSTSLVPFLEHDDANRALMGANMQRQAVPLL RPEAPVVGTGMEYPAARDSGTVVTARRGGIVESVTADRIIVRASDGKGEEGEDDTGVDIYSLVKFRRSNQNTCLTQKPIV SKGERITRGQVIADGPATQNGELALGQNVMVAFMPWGGYNFEDAILISERLVKDDRYTSIHIEEFEIEARETKLGKEEIT RDTPNVGEDALKDLDESGIVRIGAEVKPGDILVGKVTPKGETVLTPEERLLRAIFGEKAEDVRDASLYVPPGICGTVVDV KVFSRKGVEKDERAKSIEDEEVSRLRKDFEDEISIIAADRDRKLRSLLDGIDVSREIRSRITRKIVVSKGKTLTGEMLDK LSHEQLVDLAGRLDEELGQKASRIGDAADNQVHVLQTLLEERISRATRGDELAPGVFKMVKVYVAMKRKLSVGDKMAGRH GNKGVIAKVLPEEDMPYLPDGTPVEVVLNPLGVPSRMNVGQILETHLGWAAGALGLRVASPVFDGAKEQEIKVWLKRAKL PVSGKTVLYDGRTGKPFHQEVTVGYIYLMKLAHLVDDKIHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAA HTLQEILTVKSDDVVGRTKMYESIVRGDCTLDPGLPESFNVLVKELQSLALDVELKKE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 53 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 53 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_003205449.1 | RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 54 |
| rpoB | YP_003205449.1 | RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 54 |
| rpoB | YP_003205449.1 | RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 53 |
| rpoB | YP_003205449.1 | RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 53 |
| rpoB | YP_003205449.1 | RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 53 |
| rpoB | YP_003205449.1 | RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 53 |
| rpoB | YP_003205449.1 | RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 53 |
| rpoB | YP_003205449.1 | RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 53 |
| rpoB | YP_003205449.1 | RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 53 |
| rpoB | YP_003205449.1 | RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 53 |
| rpoB | YP_003205449.1 | RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 52 |
| rpoB | YP_003205449.1 | RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 50 |
| rpoB | YP_003205449.1 | RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 50 |
| rpoB | YP_003205449.1 | RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 50 |
| rpoB | YP_003205449.1 | RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 50 |
| rpoB | YP_003205449.1 | RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 50 |
| rpoB | YP_003205449.1 | RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 50 |
