Gene Information

Name : CDR20291_1388 (CDR20291_1388)
Accession : YP_003217885.1
Strain : Clostridium difficile R20291
Genome accession: NC_013316
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1643150 - 1643965 bp
Length : 816 bp
Strand : +
Note : -

DNA sequence : 
ATGGTTAAAGTAGTATATTCACGATATTATGGTATTGTAGTAAAAATAAAAAATTATGGAGAATATAAAATGAACATATT
GAGTATTAGAAATATATCAAAAACATATTGCGGAAATATTCCATTTAAAGCATTAGATAAGGTTAGTCTAAATATAGAAA
AGGGAGAATTTGTGTCTGTTATGGGACCATCTGGAAGTGGTAAATCTACTCTTTTAAATATAATATCTACAGTTGATAGA
CAGAGTGAAGGTGAGGTTGTATTAGATGGATATGATGTAAGTAAATTGAAAGGAGAAAAACTTGCTGAATTTAGAAGGAA
ACAACTTGGTTTTGTATTTCAGGATTTTAATTTGATTGACACTTTAACTGTTGGCGAAAATATTATGTTGCCACTTACAC
TAGAGGGGGCAAGTATCAAAGATATGAATATACAAACTAAAAGTATATCTAAATTTTTAGGAATAGATAAAATTTTAGAT
AGAAAAACCTATGAAATTTCAGGAGGTCAAGCTCAAAGGTGTGCTATTGCTAGAGCTATTATAAATAAACCTACCATACT
TCTTGCAGATGAGCCAACTGGAAATCTTGATTCAAAATCTACTGATGATGTTTTGAAATTATTTACTAGGATAAACAAAG
AACAAAATGTAACAACACTTATGGTAACTCATGAAGTATATAGTGCAAGTTATTCAGATAGAGTAATTTTTATAAAAGAT
GGTTGTATATATACAGAAATAAAAAAATCTGAAAGCAGTAATTCTTTCTATTCTGATATACTAGCTGTTTTGTCTCAAAT
AGGAGGTGTAAGATAG

Protein sequence : 
MVKVVYSRYYGIVVKIKNYGEYKMNILSIRNISKTYCGNIPFKALDKVSLNIEKGEFVSVMGPSGSGKSTLLNIISTVDR
QSEGEVVLDGYDVSKLKGEKLAEFRRKQLGFVFQDFNLIDTLTVGENIMLPLTLEGASIKDMNIQTKSISKFLGIDKILD
RKTYEISGGQAQRCAIARAIINKPTILLADEPTGNLDSKSTDDVLKLFTRINKEQNVTTLMVTHEVYSASYSDRVIFIKD
GCIYTEIKKSESSNSFYSDILAVLSQIGGVR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-22 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CDR20291_1388 YP_003217885.1 ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 6e-36 49
CDR20291_1388 YP_003217885.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 2e-31 43
CDR20291_1388 YP_003217885.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 4e-31 41