Gene Information

Name : CDR20291_2820 (CDR20291_2820)
Accession : YP_003219298.1
Strain : Clostridium difficile R20291
Genome accession: NC_013316
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 3338535 - 3339281 bp
Length : 747 bp
Strand : -
Note : -

DNA sequence : 
ATGAAAATTTTAACTGTAAATAATTTAAGTAAAGTATATGGTAAAAAAATAATTTTCAACGCATTAAATGACATAAATTT
TAGTATAGAAGATGGAGAATTTGTAGGAATTATGGGTCCATCTGGTAGTGGAAAAACTACTCTTTTAAATATGATTTCTA
CTATTGACAAGCCAACTACAGGAACTATGGAATTAAAGGGAAAGAATCCTTTATTGTTAAGAGGTGAGGAACTTGCATTA
TTTAGAAGAAGAGAGTTAGGTTTTGTATTTCAGGATTTTAATTTATTGGATACATTAACTATAGGAGAAAATATAGTATT
GCCATTGACATTAGATAAGGTCAGTGTAAAAGAGCAAGATGAGAGATTGAATGAAGTATCTACAATATTAGGTATAAAAG
ATTTATTAGGAAAAAGAACTTTTGAAGTATCAGGTGGTCAAGCTCAGAGGACTGCTATTGCTAGAGCATTGATTAACAAT
CCATCAATACTTTTAGCAGATGAACCAACAGGTAATTTAGATTCAAAGTCATCAAAGGTTGTAATGGAGCTATTTCAAAA
GATAAATAAAGAAAATAAAGTTACTACTATGATGGTAACTCATGACCCATTAGCAGCGAGCTACTGTAGTAGAATCTTAT
TCATAAAAGATGGGTCTATATATAATGAAATATATAAGGGTAGTAGTAGAGAGCAGTTTTATCAAGAGATAATGGATGTA
CTTACATTATTGGGAGGCGATAACTAA

Protein sequence : 
MKILTVNNLSKVYGKKIIFNALNDINFSIEDGEFVGIMGPSGSGKTTLLNMISTIDKPTTGTMELKGKNPLLLRGEELAL
FRRRELGFVFQDFNLLDTLTIGENIVLPLTLDKVSVKEQDERLNEVSTILGIKDLLGKRTFEVSGGQAQRTAIARALINN
PSILLADEPTGNLDSKSSKVVMELFQKINKENKVTTMMVTHDPLAASYCSRILFIKDGSIYNEIYKGSSREQFYQEIMDV
LTLLGGDN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 8e-24 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CDR20291_2820 YP_003219298.1 ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 3e-41 48
CDR20291_2820 YP_003219298.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 2e-34 47
CDR20291_2820 YP_003219298.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 1e-38 44
CDR20291_2820 YP_003219298.1 ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 5e-33 41