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Name : secD (D11S_1807) Accession : YP_003256387.1 Strain : Aggregatibacter actinomycetemcomitans D11S-1 Genome accession: NC_013416 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 1739023 - 1740873 bp Length : 1851 bp Strand : + Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGTTAAATCGTTACCCTTTATGGAAGAATCTAATGGTGATCTTCGTGGTCGCCATTGGTATTTTATATGCTCTTCCAAA TCTTTACGGTGAAGATCCTGCCGTACAAATTTCAGGAACTCGCGGTCAGGAAGCCAATTCTGCTGTACTTAGCGATGTTC AATCCGTGCTTAAAGATAATAATCTGACAACCAAATCCATCGTATTGGAAAGCGGCTCGATTTTAGTGCGTTTTAACAAT ACGGATACACAATTACTCGCCAAAGACAAAATTACCGAAAAATTAGGCACCAACTATTCCGTCGCGTTAAACCTTGCACC GGCAACCCCGAAATGGCTAAGTAGCATTGGCGGTAACCCGATGAAATGGGGTCTGGACTTACGTGGTGGCGTGCGCTTCC TGATGGAGGTGGACATGAATTCCGCACTGTCCAAACGTCAGGAACAGTTGCAGGATTCTTTGCGTACCGAACTGCGCAAA GAAAAATATCAATACAGCGCCATTAAATCCATTGATAATTTCAGCACCGGCGTAACCTTAACCAATTCTGAACAACTTTC TGACGTACAACGCTACTTACGCAAACAGCACCCGAATCTAGATGTTAGTGTCACATCCGAGAACACCTTGTCCCTAGGCT TATCTGATTCCGTATTGAATGAAGCCCGTGAGAGCGCTATTGAGCAAAACCTGAGTATTTTACGTAAACGTGTTACCGAA TTGGGCGTCGCCGAAGCCGTTATTCAGCGTCAAGGGGCGGAACGCATTGTGGTTGAATTACCGGGGGTACAAGACACTGC CCGTGCGAAAGAAATTCTCGGTGCAACGGCTACCCTTGAATTTCGTATAGTTAATGCAAGCGCTAATTTAGAAGCGGCAG CGCGTGGTATGGTGCCTTCCGATTCCGAAGTCAAATACGACAGAAACAATCGTCCTGTAGTGTTATATAAACGCGCAGTA CTCGGTGGCGAGCACATTACCAATGCCAGCTCCGGTGTCGATCAAAACACGTCGTTGCCGCAAGTGAGCGTGACCTTGGA TAGCGAGGGCGGCGAAATCATGTCACAAACCACCCGTTTAAACCTGAAAAAACCGATGGCGACCTTATATGTAGAATATA AAGACAGCGGTAAAAAAGACGAAAACGGTAAAACCATTTTACAAAAACACGAAGAAGTCATTAACGTCGCGACTATTCAA GGTCGTTTCGGCAGTCAATTCCAAATTACCGGTATCGACTCCCCGGCAGAAGCACAAAACCTTGCCGTGCTACTCCGTTC CGGTGCGTTAATTGCGCCAATTCAAATTGTGGAAGAACGTACCATCGGTCCGTCTCTCGGGGCACAAAATGTAGAACAAG GCTTACAGGCCAGCTTCTGGGGCTTAATGATCGTGGTGGCATTTATGGTTATTTACTACCGTAAATTCGGCATCATCGCC AATATTGCTTTAATCGCCAATATCGTTTTATTGGTCGGTTTAATATCGTTATTGCCAGGCGCCACGCTCACCATGCCGGG CATTGCCGGTATCGTATTGGCAGTAGGGATGTCGGTGGATGCGAACGTATTGATTTTCGAGCGAATTAAAGAAGAAATCC GCAACGGTCGTCCAATCCAGCAAGCCATTAATGAAGGTTATAGCGGCGCATTCAGTTCCATCTTCGATGCCAACTTAACC ACGATTTTAACCGCAGTCGCCCTCTACGCGGTGGGTACCGGTCCGATTAAAGGTTTCGCAATCACCCTATCTTTAGGTAT TGCCATCTCAATGTTTACCGCAATCACCGGAACACGGGCAATCGTGAATTTCTTATACGGCGGCAAACGAATTGATAAAT TATCAATTTAA Protein sequence : MLNRYPLWKNLMVIFVVAIGILYALPNLYGEDPAVQISGTRGQEANSAVLSDVQSVLKDNNLTTKSIVLESGSILVRFNN TDTQLLAKDKITEKLGTNYSVALNLAPATPKWLSSIGGNPMKWGLDLRGGVRFLMEVDMNSALSKRQEQLQDSLRTELRK EKYQYSAIKSIDNFSTGVTLTNSEQLSDVQRYLRKQHPNLDVSVTSENTLSLGLSDSVLNEARESAIEQNLSILRKRVTE LGVAEAVIQRQGAERIVVELPGVQDTARAKEILGATATLEFRIVNASANLEAAARGMVPSDSEVKYDRNNRPVVLYKRAV LGGEHITNASSGVDQNTSLPQVSVTLDSEGGEIMSQTTRLNLKKPMATLYVEYKDSGKKDENGKTILQKHEEVINVATIQ GRFGSQFQITGIDSPAEAQNLAVLLRSGALIAPIQIVEERTIGPSLGAQNVEQGLQASFWGLMIVVAFMVIYYRKFGIIA NIALIANIVLLVGLISLLPGATLTMPGIAGIVLAVGMSVDANVLIFERIKEEIRNGRPIQQAINEGYSGAFSSIFDANLT TILTAVALYAVGTGPIKGFAITLSLGIAISMFTAITGTRAIVNFLYGGKRIDKLSI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 8e-115 | 45 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 4e-115 | 45 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 4e-115 | 45 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 4e-115 | 45 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 9e-116 | 45 |
