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Name : secD (Pecwa_3289) Accession : YP_003260638.1 Strain : Pectobacterium wasabiae WPP163 Genome accession: NC_013421 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 3589351 - 3591165 bp Length : 1815 bp Strand : - Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGCTGGTCGTGGTGTTGTTTGTCGGCCTGCTCTATGCGCTTCCTAACCTATATGGTGAGGATCCGGCGGTACAAGTTAC TGGTGCGCGGGGAACCGCCGCCAGCGAAACGACGCTGATCCAAGTCCAGAATGTCCTGAAAGAACAAAATATTACCAGTA AGTCGATTGCATTAGAAAATGGTGCAATTCTGGCTCGCTTCTCTAACCCTGATATTCAGCTCCGTGCGCGTGAAGCGCTC GTTAATGAGCTGGGCGAAAAATTCGTCGTTGCACTTAACCTTGCTCCTGCTACGCCAACCTGGCTGCGGTTGTTAGGTGC TGAACCGATGAAATTGGGGCTTGACCTGCGCGGCGGCGTTCACTTCCTGATGGAGGTGGATATGGATACGGCGCTGGGTA AATTACAAGAACAAACCATGGACTCTTTGCGCAGCGATCTGCGTGAGAAGAACATTCCTTATGCCGCTGTACGTAAGATT GATAATTACGGCGTCGAAATTCGCTTCCGTGATGCTCAAACGCGTGATGATGGCCTCAGCTATCTGACGTCTCGTCATCG TAACCTGGTTCTCAGCAGTAGCGGTGGCAACCTGATGCGTGCGGTGATGTCGGACGAACGTCTGCGTGAAGCACGTGAAT ACGCCGTACAGCAGAACATCAATATCCTGCGTAATCGTGTGAACCAACTGGGCGTTGCCGAACCGCTGGTACAACGTCAG GGTTCTGACCGCATCGTCGTTGAATTACCAGGTATTCAAGACACGGCGCGCGCGAAAGAAATTCTTGGTGCAACCGCTAC GCTGGAATTCCGTCTGGTCAACAGCGATGCTGATGCGACAGCGGCGGCAAACGGCCGTGTGCCGGGCGATTCCGAAGTGA AGAATATGCGTGACGGTTCACCCGTTGTGCTGTTCAAACGCGTCATCCTGACGGGCGACCACATCACGGATTCCACATCA AGCAATGACGAATACAATCGTCCTCAGGTGAATATTTCTCTGGACAGCGCGGGTGGCAACACCATGTCCAATTTCACCAA AGACAGTATTGGTAAGCTGATGGCGACGCTGTTTGTGGAATACAAAGACAGCGGCAAGAAAGATGCGACGGGTCGTTCAA TACTGGAAAAACACGAAGAAGTGATCAACGTGGCGACGATTCAGTCGCGACTGGGTAACAGCTTCCGTATTACCGGCATT GATAACCCGAATGAAGCGCGTCAGCTTTCTCTGTTGCTGCGTGCGGGTGCGCTGATTGCTCCGATCCAGATCGTGGAAGA ACGTACTATTGGGCCAACGCTGGGGATGCAAAACATCACTCAGGGTCTGGAAGCCTGTTTGTGGGGCTTGATCGCGTCGA TTCTCTTTATGGTTTTCTTCTACAAGAAGTTTGGTGTGATTGCGACCAGTGCATTGGTTGCTAACCTGGTATTGATTGTC GGTGTGATGTCATTGTTACCTGGCGCTACGCTGACCATGCCGGGTATTGCCGGTATCGTGTTGACGTTGGCGGTTGCCGT GGATGCTAACGTATTAATCAACGAACGTATCAAGGAAGAACTCAGTAATGGTCGCTCTATACAGCAGGCTATCCACGAGG GCTACAAAGGTGCATTCAGTTCCATTGTTGATGCGAACGTCACAACGTTGATTAAAGTCATCATCCTGTATGCCGTGGGT ACCGGTTCAATCAAAGGGTTTGCTATTACTACTGCGATTGGGATTGCGACCTCAATGTTTACGGCGATCGTCGGTACTCG TGCCATCGTTAACCTGCTTTACGGCGGTAAACGCATCAACAAGCTGTCTATCTGA Protein sequence : MLVVVLFVGLLYALPNLYGEDPAVQVTGARGTAASETTLIQVQNVLKEQNITSKSIALENGAILARFSNPDIQLRAREAL VNELGEKFVVALNLAPATPTWLRLLGAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQTMDSLRSDLREKNIPYAAVRKI DNYGVEIRFRDAQTRDDGLSYLTSRHRNLVLSSSGGNLMRAVMSDERLREAREYAVQQNINILRNRVNQLGVAEPLVQRQ GSDRIVVELPGIQDTARAKEILGATATLEFRLVNSDADATAAANGRVPGDSEVKNMRDGSPVVLFKRVILTGDHITDSTS SNDEYNRPQVNISLDSAGGNTMSNFTKDSIGKLMATLFVEYKDSGKKDATGRSILEKHEEVINVATIQSRLGNSFRITGI DNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNITQGLEACLWGLIASILFMVFFYKKFGVIATSALVANLVLIV GVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELSNGRSIQQAIHEGYKGAFSSIVDANVTTLIKVIILYAVG TGSIKGFAITTAIGIATSMFTAIVGTRAIVNLLYGGKRINKLSI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 1e-118 | 46 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 1e-118 | 46 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 1e-118 | 46 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 9e-119 | 46 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 2e-119 | 46 |
