Gene Information

Name : Hoch_3973 (Hoch_3973)
Accession : YP_003268365.1
Strain : Haliangium ochraceum DSM 14365
Genome accession: NC_013440
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 5475039 - 5475866 bp
Length : 828 bp
Strand : -
Note : PFAM: ABC transporter; SMART: ATPase AAA; KEGG: gme:Gmet_2358 ABC transporter-related protein

DNA sequence : 
GTGGCCATGGACAAGGTCTACCCGCACGGCGGCCGCGATGTGCAGGTGCTGCGCGATGTCGATCTGCTGCTCGAGCCCGG
GGAGATGGTGGCCATCGTCGGCGCCTCGGGCGTGGGCAAATCCACGCTGCTGCAGATCCTGGGCACCCTCGACGTGCCGT
CCTCGGGCAAGCTGCTGATCAACGATCAGGACATCACCTCCATGGGGCCGGCGCGGCTGGCGCAGTTTCGCAACCGCGAG
ATCGGCTTCGTGTTCCAGTTCCACCACCTGCTGCCCGAGTTCACGGCGCTCGAGAACGTGATGATGCCGGCGCTCATCCA
GCGCATCGCGCGCAACAAGGCCGAGCGGCGCGCGCGCGATGTGCTCGGCCGGGTCGGGCTCTCGCATCGGCTCACGCACA
AGCCCTCGGAGCTGAGCGGCGGCGAGCAACAGCGCGTGGCTCTGGCGCGGGCGCTGGTCCTCGAGCCCTCGCTGCTGCTG
GCCGACGAGCCCACGGGCAACCTCGACAAGCGCACGGGCGAGTCCATTCACGAGCTGTTCGTCGAGCTCAACCGCGAGCG
TGGCTCGACCCTGCTCGTGGTCACGCACAACCCTGAGCTGGCGGCGCTGATGCCGCGCTGTCTGCACATGCTCGACGGCG
GTGGCCTGGCCGAGCGCGTGCAAAGCGAACCGTACAACACCCCCGTGACTGCCGCGCCGGACGCGGCGGTCGCTCCCGGC
GATGGGTCCGCCGAGGCTGCCGACGCACCGTCGGCGCAGGACCTGCCCGACGCCGACCCCCCCTCGGCGTCCGGCGCGCA
CGACTCACCCTCGCAGGAATCCCGATGA

Protein sequence : 
MAMDKVYPHGGRDVQVLRDVDLLLEPGEMVAIVGASGVGKSTLLQILGTLDVPSSGKLLINDQDITSMGPARLAQFRNRE
IGFVFQFHHLLPEFTALENVMMPALIQRIARNKAERRARDVLGRVGLSHRLTHKPSELSGGEQQRVALARALVLEPSLLL
ADEPTGNLDKRTGESIHELFVELNRERGSTLLVVTHNPELAALMPRCLHMLDGGGLAERVQSEPYNTPVTAAPDAAVAPG
DGSAEAADAPSAQDLPDADPPSASGAHDSPSQESR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-23 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Hoch_3973 YP_003268365.1 ABC transporter NC_012469.1.7686878. Protein 1e-36 48
Hoch_3973 YP_003268365.1 ABC transporter NC_008702.1.4606598. Protein 9e-31 47
Hoch_3973 YP_003268365.1 ABC transporter CP001581.1.gene798.p Protein 1e-32 43