|
Name : Hoch_4016 (Hoch_4016) Accession : YP_003268408.1 Strain : Haliangium ochraceum DSM 14365 Genome accession: NC_013440 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 5514080 - 5518291 bp Length : 4212 bp Strand : - Note : KEGG: afw:Anae109_2221 DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase subunit beta; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 7; RNA polymerase Rpb2 domain 2; RNA polymerase subunit beta; RNA polymerase DNA sequence : ATGGCGTCGGTAATCCAGAACAACTTCCGGGTCCGGAAGAGCTTTGCCAAGCTCAAGAAGGTCATCGATATCCCGAACCT GATCGATATCCAGAAGCGGTCCTACGATAAGTTCCTCCAGATCGATATCCCTGCCGAGGAGCGGGAGGATGTCGGCCTCC AGGGGGTGTTCAAGAGCGTATTCCCCATCAAGGACTTCTCCGAGACGTCTTCGCTGGAGTTCGTCTCGTACAACCTCGAG CGTCCCAAGTACGACGTCGACGAGTGTCGGGCCCGCGGGATGACCTTCGCCGCGCCGGTGAAGGTCGTGATCCGCTTGGT GGTGTGGGACGTCAACGAAGAGACCGGCGTGCAGTCGATCCGCGACGTCAAAGAGCAGGAGGTCTACTTCGGCGAGATCC CGCTCATGACCGACAGCGGTACCTTCATCATCAACGGTACCGAGCGCGTCATCGTCTCGCAGCTGCACCGCTCGCCCGGT GTGTTCTTCGACCACGATAAGGGCAAGACCCACTCGTCGGGCAAGCTGCTGTACAGCGCCCGGGTCATCCCGTATCGCGG CTCGTGGCTCGACTTTGAGTTCGACCACAAGGACATCCTCTACGTCCGCATCGATCGCCGGCGCAAGCTGTACGCCACCG TGCTGCTGCGCGCGCTCGGCTACTCGACCGAGGATCTGCTCAACTACTTCTACGACACCGAGGTGATCCACATCGAGGGG CCGCAGAAGTTCTCGCGGACCATCAACTACGACCTGCTGCTCGGCCAGCGCGCGACCCGCGACATCCGTCACCCGGACAG CCGCGAGATCCTGGTGCGCAAGAACCGCAAGTTCACGCGCGCCGCGATCCGCAAGCTGCGCGACTCGGACATCGAGAAGC TCACGATCGACCTCGAGGAGCTCGTCGGCAAGGTGTCGGCGCGCGACATCATCGATGAGAGCACCGGCGAGGTGCTGCTG CAGTGCAACGAGGAGCTGAGCGAGGAGAAGCTCGAGGAGCTGCGCACGCGCGGCGTCGAGCGCTTCGATGTGCTGTTCAT CGACAACCTCAACGTCGGCCCGTACCTGCGCACGACCCTGCTCGCCGACAAGCTGCAGGGCCCGGAAGAGGCGATCATGG AGATCTACCGGCGCCTCCGCCCGGGTGATCCGCCGACCATCGACACCGCGCAGAACCTGTTCCAGAACCTGTTCTTCAAC CCCGAGCGCTACGACCTGTCGCAGGTCGGCCGGCTCAAGCTCAACTACAAGTTCCGCCTCGACGAGTCGCTCGACAACCC GGTGCTCACCCGGCGCGACATCCTGGAGACGGTGCGCTACCTCATCGAGCTGCGCAACGGCCGCGGCATCATCGACGATA TCGACCATCTCGGTAACCGTCGCGTGCGCGCCGTCGGCGAGCTGATGGAGAACCAGTACCGCATCGGTCTGGTGCGCATG GAGCGCGCGATCAAGGAGCGCATGAGCATGTCTCAGGAGATCGAGACGCTCATGCCGCACGACCTGATCAACGCCAAGCC GGTGTCGGCCGTGGTCAAGGAGTACTTCGGCAGCTCGCAGCTGTCGCAGTTCATGGACCAGACCAACCCGCTGTCCGAGG TGACGCACAAGCGCCGCCTGTCGGCGCTCGGCCCCGGCGGTCTCACGCGCGAGCGCGCCGGCTTCGAGGTGCGCGACGTG CACCCGACGCACTACGGCCGCATCTGCCCGATCGAGACGCCGGAAGGTCCCAACATCGGCCTCATCGCCTCGCTCTCGAC CTATGCGCGGGTCAACCAGTACGGCTTCATCGAGACGCCGTATCGCCGCGTGAACGACGGCAAGGTGACCGAGGAGGTGC AGTTCTACTCGGCCCTCCAGGAGGAGGGGCAGGTCATCGCCCAGGCCAACGCGGCCCACGACCCGAGCGGCGCCTTCAGC GAGGACTTCGTGTCCTGCCGCCGCGCCGGCGACGTGTCGATGGTGCGTCCCGAGGACGTCACCCTGATGGACGTCTCGCC CAACCAGCTCGTGTCCGTGGCCGCGTCGCTGATTCCCTTCCTCGAGCACGACGACGCCAACCGCGCGCTCATGGGATCGA ACATGCAGCGGCAGGCGGTGCCCCTGGTGCGCACGGCCGCGCCGCTGGTCGGCACCGGCATCGAGAACATCGTCGCCCGC GACTCGGGCGTCACCGTGGTCGCCAAGCGCGACGGCGTGGTCGAGTCGGTGGACGGCGCGCGCATCGTGATCAAGCCCTT CGAGACCGACGGGGAAGATTCGCTCGGCGCCAAGCCCGACATCTACAACCTGGTCAAGTTCCAGCGCAGCAACCAGAACA CCTGCAGCAACCAGAAGCCCATCGTGCGCCGCGGCGATACGGTGCGCGTCGGCGACGTCATCGCCGACGGTCCGGCGACC GAGTGCGGTGAGCTGGCGCTGGGCCAGAACACGGTGGTCGCGTTCATGCCGTGGGGTGGCTACAACTTCGAGGACTCGAT CCTCGTCAACGAGCGCCTGGTCAAGAACGACACCTTCACCTCGGTGCACATCGAGGAGTTCGAGTGCGTCGCGCGCGACA CCAAGCTCGGCAAGGAAGAGATCACGCGCGACATCCCCAACGTCGGCGAGGAGGCGCTCAAGGACCTCGACGACTCGGGC ATCGTGCGCATCGGCGCCGAGGTCAAGGCCGGCGACATCCTGGTCGGCAAGATCACGCCCAAGGGCGAGACCCAGCTCTC GCCCGAGGAGAAGCTGCTCCGCGCGATCTTCGGCGAGAAGGCCGGCGACGTCCGCGACACCTCGCTGCGCGTGCCCCCGG GCGTGAGCGGTGTGGTCATCAACGCCCGCGTGTTCGCGCGCAAGGGCACCGAGAAGGACGACCGCGCCAAGGACATCGAG GACGCCGAGAAGGAGAAGCTGCTGCTCAACAAGCAGACCGAGATCAAGATCATCTCGGACTCCTACTACGGCAAGATGCG CAAGCTGCTGGTCGGCAAGACCACGGCCGCGCGTCTGGTCGACGACAAGGGCAAGGTGCTGCTGCCCAAGGGCCAGAAGA TCGACGCCGCCGCGCTCGACCAGGTGCCCGCGCGCTACTGGCACGAGGTCCAGGCCGAGGGTGACACCAAGGTCGAGGAG TCGCTCGAGAAGCTGGCCGCGCAGCGCGAAGAGGACGTGCGCCTCATCGAGGAGCAGTACGACGAGAAGATCGGCAAGCT GACCAAGGGCGACGAGCTGCCTCCGGGCGTGATCAAGCTGGTCAAGGTCTACCTGGCCATCAAGCGCAAGCTCTCGGTGG GTGACAAGATGGCCGGTCGCCACGGCAACAAGGGTGTGGTCTCGCGCCTGTTGCCCGAGGAGGACATGCCGTACCTGTCC GACGGGACGCCCGTGGACATCGTGCTCAACCCGCTCGGTGTGCCCTCGCGTATGAACGTCGGCCAGATCCTCGAGACCCA CCTGGGCTGGGCGGCGCGCGAGATCGGCCGCCAGATCGACATGTACATGGAGACCTCCTGGTCGGCCGATGTGCTGCGCG AGAAGCTCAAGAAGGTCTTCAACACCGCCCAGGCGCACGAGTTTCTCGACCGCCTGGACAACGAAGATATCGGACGCTTC GCCACCAAGCTGCGCAAGGGCATCCACTTCGCGACGCCGGTCTTCGACGGCGCCGCCGAGGACGAGATCAAGGCGGCCCT CAACATGGCCGGCATGCGCCCGAGCGGCCAGTCGCAGCTGTGCGACGGCAAATCCGGCGAGCCCTTCGACAACCCGGTGA CCGTGGGCGTGATGTACATGCTCAAGCTGCACCACCTGGTGGACGACAAGATCCACGCGCGCAGCATCGGTCCGTACTCG CTGGTTACGCAGCAGCCGCTGGGCGGCAAGGCCCAGTTCGGCGGTCAGCGTCTCGGCGAGATGGAAGTCTGGGCCATGGA GGCCTACGGCGCGGCCTACGCGCTGCAGGAGTTCCTCACCGTCAAGAGCGACGACGTGCTCGGCCGTACCCGCATGTACG AGTCGATCGTCAAGGGCGAGCACGTGCTCGAGGCCGGCTTGCCGGAGTCGTTCAACGTGCTGCTCAAAGAGCTTCAGTCG CTGTGTCTCGACGTCGAGCTCATCGAGGATCCCTCGGCTCCGCGCAAGCAGGAGCACGCGGGCCCCGGTGTGCCGGCCGG TCTCGCCGCGCTGGCGCGCGAGGTCGCTGAGAAGGTGGGCGGCGCCCAGTAG Protein sequence : MASVIQNNFRVRKSFAKLKKVIDIPNLIDIQKRSYDKFLQIDIPAEEREDVGLQGVFKSVFPIKDFSETSSLEFVSYNLE RPKYDVDECRARGMTFAAPVKVVIRLVVWDVNEETGVQSIRDVKEQEVYFGEIPLMTDSGTFIINGTERVIVSQLHRSPG VFFDHDKGKTHSSGKLLYSARVIPYRGSWLDFEFDHKDILYVRIDRRRKLYATVLLRALGYSTEDLLNYFYDTEVIHIEG PQKFSRTINYDLLLGQRATRDIRHPDSREILVRKNRKFTRAAIRKLRDSDIEKLTIDLEELVGKVSARDIIDESTGEVLL QCNEELSEEKLEELRTRGVERFDVLFIDNLNVGPYLRTTLLADKLQGPEEAIMEIYRRLRPGDPPTIDTAQNLFQNLFFN PERYDLSQVGRLKLNYKFRLDESLDNPVLTRRDILETVRYLIELRNGRGIIDDIDHLGNRRVRAVGELMENQYRIGLVRM ERAIKERMSMSQEIETLMPHDLINAKPVSAVVKEYFGSSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDV HPTHYGRICPIETPEGPNIGLIASLSTYARVNQYGFIETPYRRVNDGKVTEEVQFYSALQEEGQVIAQANAAHDPSGAFS EDFVSCRRAGDVSMVRPEDVTLMDVSPNQLVSVAASLIPFLEHDDANRALMGSNMQRQAVPLVRTAAPLVGTGIENIVAR DSGVTVVAKRDGVVESVDGARIVIKPFETDGEDSLGAKPDIYNLVKFQRSNQNTCSNQKPIVRRGDTVRVGDVIADGPAT ECGELALGQNTVVAFMPWGGYNFEDSILVNERLVKNDTFTSVHIEEFECVARDTKLGKEEITRDIPNVGEEALKDLDDSG IVRIGAEVKAGDILVGKITPKGETQLSPEEKLLRAIFGEKAGDVRDTSLRVPPGVSGVVINARVFARKGTEKDDRAKDIE DAEKEKLLLNKQTEIKIISDSYYGKMRKLLVGKTTAARLVDDKGKVLLPKGQKIDAAALDQVPARYWHEVQAEGDTKVEE SLEKLAAQREEDVRLIEEQYDEKIGKLTKGDELPPGVIKLVKVYLAIKRKLSVGDKMAGRHGNKGVVSRLLPEEDMPYLS DGTPVDIVLNPLGVPSRMNVGQILETHLGWAAREIGRQIDMYMETSWSADVLREKLKKVFNTAQAHEFLDRLDNEDIGRF ATKLRKGIHFATPVFDGAAEDEIKAALNMAGMRPSGQSQLCDGKSGEPFDNPVTVGVMYMLKLHHLVDDKIHARSIGPYS LVTQQPLGGKAQFGGQRLGEMEVWAMEAYGAAYALQEFLTVKSDDVLGRTRMYESIVKGEHVLEAGLPESFNVLLKELQS LCLDVELIEDPSAPRKQEHAGPGVPAGLAALAREVAEKVGGAQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 57 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 57 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Hoch_4016 | YP_003268408.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 59 |
| Hoch_4016 | YP_003268408.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 58 |
| Hoch_4016 | YP_003268408.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 58 |
| Hoch_4016 | YP_003268408.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 58 |
| Hoch_4016 | YP_003268408.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 58 |
| Hoch_4016 | YP_003268408.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 58 |
| Hoch_4016 | YP_003268408.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 58 |
| Hoch_4016 | YP_003268408.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 58 |
| Hoch_4016 | YP_003268408.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 57 |
| Hoch_4016 | YP_003268408.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 57 |
| Hoch_4016 | YP_003268408.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 57 |
| Hoch_4016 | YP_003268408.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 57 |
| Hoch_4016 | YP_003268408.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 57 |
| Hoch_4016 | YP_003268408.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 57 |
| Hoch_4016 | YP_003268408.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 57 |
| Hoch_4016 | YP_003268408.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 57 |
| Hoch_4016 | YP_003268408.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 57 |
| Hoch_4016 | YP_003268408.1 | DNA-directed RNA polymerase subunit beta | NC_012469.1.7686402. | Protein | 0.0 | 47 |
