Gene Information

Name : CtCNB1_1772 (CtCNB1_1772)
Accession : YP_003277814.1
Strain : Comamonas testosteroni CNB-1
Genome accession: NC_013446
Putative virulence/resistance : Virulence
Product : ECF subfamily RNA polymerase sigma-24 subunit
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 2007512 - 2008003 bp
Length : 492 bp
Strand : +
Note : COG1595, RpoE, DNA-directed RNA polymerase specialized sigmasubunit

DNA sequence : 
TTGACCGACGTGGCCAAGATTTATGGAGAGCATCACCCCTGGCTTTTGGGCTGGCTGAGGCGCAAGCTCGGCGGAGCTGA
TCATGCCGCGGATCTTGCGCAAGATACCTTTGTGAGAGTGCTGGCTGCCCAGGCGGAGCAGCGCGCGCTGGTGTTGCGCG
AACCGCGTGCCTATCTGACCACGGTGGCGCGCAATCTGCTCATCAATCATGTGCAGCGGCTGTCGCTGGAGAAGGCATGG
CTGGACGCGATGGCCCAGTTGCCGGAGCCTCTGGCGCCTTCGCCCGAGCAGCAGTTGCTGGTGCTGGAGTCATTGCATCA
GGTCGATGCCATGCTCAACGGCTTGCCACCCAAGGTGCGCGAGGCGTTTCTACTATCCCAACTCGATGGTCTGAGCTATG
CACAGGTGGCAGAGCGCCTGGGAGTCACGTCTCGCACCGTCAAGCGCTATATGGCCCAGGCATTCGAGCAGTGCATTTTG
CTGGTGATTTGA

Protein sequence : 
MTDVAKIYGEHHPWLLGWLRRKLGGADHAADLAQDTFVRVLAAQAEQRALVLREPRAYLTTVARNLLINHVQRLSLEKAW
LDAMAQLPEPLAPSPEQQLLVLESLHQVDAMLNGLPPKVREAFLLSQLDGLSYAQVAERLGVTSRTVKRYMAQAFEQCIL
LVI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 5e-28 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CtCNB1_1772 YP_003277814.1 ECF subfamily RNA polymerase sigma-24 subunit VFG1049 Protein 2e-28 48