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Name : Rmar_1108 (Rmar_1108) Accession : YP_003290387.1 Strain : Rhodothermus marinus DSM 4252 Genome accession: NC_013501 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : - Position : 1277719 - 1281558 bp Length : 3840 bp Strand : + Note : TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 7; RNA polymerase Rpb2 domain 3; RNA polymerase Rpb2 domain 2; RNA polymerase beta subunit; KEGG: gsu:GSU2863 DNA-directed RNA polymerase su DNA sequence : ATGTCTGAGTTCAACGGCCAGCCGGGCACGAACGGACGGATTTCGTTTGCCCGCACCAAGACGGTCCTGGACTACCCCGA CCTCCTGGAGATCCAACTGCAGGCCTTCAAGGAATTTGTGCAGGACGACGTGCCGCCGGAGGAGCGTGAGGACAAAGGTC TTCAGGCGGTCTTCAAAGAGCACTTTCCGATTACCGACAGTCGGGAGCGCTACATCCTGGAATTCCTCTACTACGCGCTG GACACCCCCAAGCACACGATCGAGGAGTGCCTGGCGCAGGGACTGACCTATTCGGTCCCGCTCAAGGCCAAGCTCCGACT GTCGATCCTGGAAGACGAGGACGAAGAGGAGGCCGGGGAGGCAATCGAACAGGAAGTGTACCTGGGCAACCTGCCCTACA TGACCGAGCGCGGCACCTTCATCATCAACGGTGCCGAGCGCGTGATCGTCTCGCAGCTCCACCGGAGTCCGGGCGTCTTC TTCAGCCAGAGCGTCCACCCCAACGGGACGGAACTCTACTCGGCACGCGTCATCCCGCTGCGCGGCTCGTGGCTGGAGTT CTCCACGGACGTGGCCGGCATCCTGTGGGCTTATATCGACCGGCGCAAGAAGATTCCGGTCACGACGCTGCTGCGCGCGC TGGGCTACTCCTCGGACGAGGACATCATCCAGCTCTTCGAGCTGGCCGAAGAGGCCGATATTTCGACGAAGAAGGCTTTC AAAAACTATATCGGCCGTAAGCTGGCCTCGTCGATTACGCTGGAACGCATCATCGAGATCGTCGACGAGGACACCGGCGA GGTCCTGGAGGAAAAGCGTGAGCGCGAGGTGCTTCTGCCGGCCGAACATGAGCTGCAGGAAGGGGACTATGATCGGCTCA AAGAGGCCGGCATCACGAAACTCTACCTTCTGAAGGAGGACGAAGACGAAGAGGAGGCGCTCGACAAAAGCCTGCTGCTG AACACGCTTCGGAAAGACCCCACGCACTCGGAAGCCGAAGCGCTGGAATACATTTACTTCCAGCTACGCGGGACGGAGAC GCCCGATCTCGAGACGGCGCGCGCGCTGCTGGACCGGCTGTTCTTCAATGAGAAGCGCTACGACCTGGGGGCCGTCGGAC GCTACCGCCTCAACAAGCGGCTGCGTCAGAATACCCCCATGGATGTCCTCACGCTCACGAAGGAGGACATCGTCGCCATC GTGCGCGAGCTGGTGCTGCTGCAGAACGGCCGCAGCACGGTGGACGACATCGACCACCTGGGCAACCGCCGCGTGCGCAC GGTGGCCGAGCAGCTGGCGGCGCAGTTCTCGGTGGGGCTGGCCCGCATGGCCCGTACCATCAAAGAGCGCATGAACCTGC GCGACGCCGAGAGCTTCACGCCGCAGGACCTGGTCAACGCCCGCACGATCGCCAGCGTCATCAACACGTTCTTTGGAACG AACCAGCTCAGCCAGTTCATGGATCAGACCAACCCGCTGGCCGAGCTGACGCACAAGCGGCGTGTGTCGGCGCTGGGGCC GGGTGGTCTGACGCGCGAGCGGGCCGGCTTTGAGGTGCGTGACGTGCACTACACGCACTACGGCCGTCTCTGCCCCATTG AGACGCCGGAAGGCCCCAACATCGGACTGATCTGCTCGCTGACGGTGCACGCCCGGATTAACGAGTTCGGCTTTATCGAG ACGCCCTACCGGGTGGTGCGCAACGGCAAGGTGACGAACGAGATCGTCTACCTGACGGCCGAGGAAGAGGACAACGCGGT CATCGCGCAGGCGAACGCGCCCATCGACGAGGAAGGCAACTTCCTCAACGAGTTCGTCAAGTGCCGCTATCGCGGTGACT TCCCGTTGATGCGGCCCGAGCAGATCCAGTACATGGACGTGGCGCCCAACCAGATCGTCTCGCCCTCGGCCAGCCTGATT CCGTTCCTGGAACACGACGACGCCAACCGCGCACTCATGGGTTCGAACATGCAGCGCCAGGCCGTGCCGCTACTGCGGCC CGAGGCGCCCATCGTGGGTACGGGCATGGAAGCCCGCGTCGCCCGCGACTCGCGCGCGCTGTTGGTGGCCGAAGGCCCGG GCGTCGTCGAGTACGTCGATGCCGAGCGCATCGTCATCCGTTACGATCAGGACCCCGAGGACGCCGAGGTCAGCTTCGAG GAACCCGTCAAGGAGTACCGGCTGATCAAATTCCGTCGCACGAATCAGGACACGTGCATCAACATGCGGCCGATCGTCAA AGTCGGCCAGCGCGTCGAGAAGGGCACGGTGCTCTGCGACGGCTTTGCCACCGAAAAGGGTGAGCTGGCCCTCGGCAAGA ACGTTCTGGTCGCCTTCATGCCCTGGCGCGGCTACAACTTCGAGGACGCCATTGTGATCTCGGAGCGTCTGGTGGCCGAG GACGTCTTCACCTCGGTGCACATCGAGGAATTCGAATGCCAGGTGCGCGACACCAAGCGCGGCCAGGAAGAGCTTACGCG GGAAATCCCGAACGTCTCCGAGGAGGCCACGAAGGACCTCGACGAGCGGGGCATCATCCGCGTGGGGGCCGAGGTGAAGG CCGGCGACATCCTCGTGGGCAAGGTCACGCCCAAGGGCGAGACGGAGCCCACGCCCGAAGAGAAGCTGCTCCGGGCCATC TTCGGCGACAAGGCCGGCGATGTGAAGGATGCCTCGCTGAAGGCGCCGCCAGGCATGAAGGGCGTCGTGATCGACACGAA GCTCTTCAGCCGCCGCAAGCTCGATCCGGCCTCGAAGAAGCGGGAGCAGCAGCGGCTGGCCGAAATCGACGAACAGCTGC AGCGGGACCTGGCCGAGCTTGACCGTCGCTTCTGGGAGAAGTTCTTCAACCTGGTCGAAGGACAGGTCTCGGCCGGCGTC GAGACGCGTGAGGGCGACATCGTGCTGCCCGAAGGCATGCCCTTCACGCGGGAAGCCTTCGAGAAGATCTCGCCGCTGCG GCTGAATCCGATGTTCCCCTTCACGCAGGACGAGACCGTAAACCGCAAGGTACAGAAGCTGCTCCGCAACTACGAGCAGG TGCACCGGCGGATCACGGGCGAGGCCAAGCGCCTCAAGCACCAGATCCAGATGGGGGACGAGCTGCCGCCCGGGATCGTG CAACTGGCCAAAGTCTACATCGCCCGCAAGCGCAAAATCCAGGTGGGCGACAAGATGGCCGGCCGGCACGGCAACAAGGG CGTAGTGGCCAAGATCGTCCCGGTCGAGGACATGCCCTTCCTTGAGGACGGGACGCCCGTGGACATTGTGCTCAACCCGC TGGGCGTGCCCTCCCGTATGAACCTGGGGCAGATTTACGAGACACTCCTCGGCTGGGCCGGCAAGGTGCTGGGCCGGAAG TTCGCCTCGCCGGTCTTCGACGGCGCCACGCTCGACGACATCAAGGCGCTGCTGCGCGAGGCGGGGCTGCCCGAGGACGG CCGCGTCCAGCTCTACGACGGCCGTACGGGCGAGCCGCTCGACGAAAAGACCACGGTGGGTTACATCTACATGATGAAGC TCAACCACCTGGTCGAGGACAAGATTCACGCCCGGTCGATCGGCCCCTACAGCCTCATCACGCAGCAGCCGCTGGGCGGT AAGGCCCAGTTCGGCGGGCAGCGTCTGGGTGAGATGGAGGTGTGGGCGCTTTACGCCTACGGTGCCGCGCACACGCTCCA GGAAATGCTCACCTACAAGTCGGACGACGTGCAGGGCCGCTCGAAGGCCTATGAGGCCATCGTCAAAGGTGAGAACCTGC CCGAGCCCGGCATCCCCGAAAGCTTCAACGTGCTGGTGCGTGAGCTGCAGGGCCTCGGCCTGGAAGTGCGGCTCGACTGA Protein sequence : MSEFNGQPGTNGRISFARTKTVLDYPDLLEIQLQAFKEFVQDDVPPEEREDKGLQAVFKEHFPITDSRERYILEFLYYAL DTPKHTIEECLAQGLTYSVPLKAKLRLSILEDEDEEEAGEAIEQEVYLGNLPYMTERGTFIINGAERVIVSQLHRSPGVF FSQSVHPNGTELYSARVIPLRGSWLEFSTDVAGILWAYIDRRKKIPVTTLLRALGYSSDEDIIQLFELAEEADISTKKAF KNYIGRKLASSITLERIIEIVDEDTGEVLEEKREREVLLPAEHELQEGDYDRLKEAGITKLYLLKEDEDEEEALDKSLLL NTLRKDPTHSEAEALEYIYFQLRGTETPDLETARALLDRLFFNEKRYDLGAVGRYRLNKRLRQNTPMDVLTLTKEDIVAI VRELVLLQNGRSTVDDIDHLGNRRVRTVAEQLAAQFSVGLARMARTIKERMNLRDAESFTPQDLVNARTIASVINTFFGT NQLSQFMDQTNPLAELTHKRRVSALGPGGLTRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLICSLTVHARINEFGFIE TPYRVVRNGKVTNEIVYLTAEEEDNAVIAQANAPIDEEGNFLNEFVKCRYRGDFPLMRPEQIQYMDVAPNQIVSPSASLI PFLEHDDANRALMGSNMQRQAVPLLRPEAPIVGTGMEARVARDSRALLVAEGPGVVEYVDAERIVIRYDQDPEDAEVSFE EPVKEYRLIKFRRTNQDTCINMRPIVKVGQRVEKGTVLCDGFATEKGELALGKNVLVAFMPWRGYNFEDAIVISERLVAE DVFTSVHIEEFECQVRDTKRGQEELTREIPNVSEEATKDLDERGIIRVGAEVKAGDILVGKVTPKGETEPTPEEKLLRAI FGDKAGDVKDASLKAPPGMKGVVIDTKLFSRRKLDPASKKREQQRLAEIDEQLQRDLAELDRRFWEKFFNLVEGQVSAGV ETREGDIVLPEGMPFTREAFEKISPLRLNPMFPFTQDETVNRKVQKLLRNYEQVHRRITGEAKRLKHQIQMGDELPPGIV QLAKVYIARKRKIQVGDKMAGRHGNKGVVAKIVPVEDMPFLEDGTPVDIVLNPLGVPSRMNLGQIYETLLGWAGKVLGRK FASPVFDGATLDDIKALLREAGLPEDGRVQLYDGRTGEPLDEKTTVGYIYMMKLNHLVEDKIHARSIGPYSLITQQPLGG KAQFGGQRLGEMEVWALYAYGAAHTLQEMLTYKSDDVQGRSKAYEAIVKGENLPEPGIPESFNVLVRELQGLGLEVRLD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 53 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 53 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Rmar_1108 | YP_003290387.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 53 |
| Rmar_1108 | YP_003290387.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 53 |
| Rmar_1108 | YP_003290387.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 53 |
| Rmar_1108 | YP_003290387.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 53 |
| Rmar_1108 | YP_003290387.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 53 |
| Rmar_1108 | YP_003290387.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 53 |
| Rmar_1108 | YP_003290387.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 52 |
| Rmar_1108 | YP_003290387.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 52 |
| Rmar_1108 | YP_003290387.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 50 |
| Rmar_1108 | YP_003290387.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 50 |
| Rmar_1108 | YP_003290387.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 50 |
| Rmar_1108 | YP_003290387.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 50 |
| Rmar_1108 | YP_003290387.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 50 |
| Rmar_1108 | YP_003290387.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 50 |
| Rmar_1108 | YP_003290387.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 49 |
| Rmar_1108 | YP_003290387.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 48 |
