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Name : rpoB (ETAE_0175) Accession : YP_003294233.1 Strain : Edwardsiella tarda EIB202 Genome accession: NC_013508 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta/140 kD subunit Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : - Position : 185318 - 189346 bp Length : 4029 bp Strand : + Note : - DNA sequence : ATGGTTTACTCCTATACCGAGAAAAAACGTATTCGTAAGGACTTTGGTAAGCGTCCCCAAGTGCTGGACGTACCATACCT CCTTTCTATCCAGCTTGACTCGTTCCAGAAGTTTATCGAGCAAGATCCGGAAGGTCAGTACGGTCTGGAAGCGGCTTTCC GTTCCGTATTCCCGATCCAGAGCTACAGCGGCAACTCCGAGCTGCAGTATGTCAGCTATCGCCTGGGTGAGCCGGTATTT GACGTCAAAGAGTGTCAGATCCGCGGCGTAACCTATTCCGCTCCGCTGCGCGTTAAGCTGCGTCTGGTGATCTACGAGCG TGAGGCGCCGGAAGGCACCGTTAAAGACATCAAAGAACAAGAAGTTTACATGGGTGAAATCCCGCTGATGACCGAAAACG GCACCTTCGTCATCAACGGCACCGAGCGTGTTATCGTGTCTCAGCTGCACCGCAGCCCGGGCGTATTCTTCGACAGCGAC AAGGGTAAAACCCACTCTTCAGGTAAGGTGCTGTATAACGCACGCATCATTCCTTACCGCGGTTCCTGGCTGGACTTTGA GTTCGACCCGAAAGACAACCTGTTTGTCCGTATTGACCGCCGCCGTAAGCTGCCGGCTACCATCATCCTGCGCGCGCTGG ATTTCACCACCGAGCAGATCCTCGATCTGTTCTTCGATAAGGTGATCTTTGAAATCCGCGACAATAAGCTGCAGATGGAG CTGGTGCCGGAGCGTCTGCGCGGTGAGACCGCCTCTTTTGATATTGAGGCCAACGGTAAGGTCTACGTTGAGAAAGGCCG CCGTATTACCGCCCGCCACATCCGTCAGCTGGAAAAAGATGACGTTAAGCTGATCGAAGTACCGGTTGAGTACATCGTCG GTAAAGTGGCCGCCAAAGATTACATCGACGAGAGCACCGGTGAGCTGATTTGCGCCGCCAACATGGAGCTGTCGTTGGAT CTGCTGGCCAAGCTGAGCCAGTCTGGTTACAAGCGTATCGAAACGCTGTTCACCAACGACCTGGATCACGGTCCGTACAT GTCCGAGACCCTGCGCGTCGATCCGACCAACGACCGTCTGAGCGCGCTGGTAGAAATCTACCGCATGATGCGCCCGGGCG AGCCGCCGACCCGCGAAGCCGCCGAAAACCTGTTCGAGAACCTGTTCTTCTCTGAAGATCGCTACGATCTGTCTGCGGTT GGCCGCATGAAGTTCAACCGTTCTCTGATGCGTGACGAGATCGAAGGTTCCGGTATCCTGAGCAAAGACGACATCATCGA GGTGATGAAGAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACCACCTGGGTAACCGTCGCATCC GCTCCGTGGGCGAGATGGCGGAGAACCAGTTCCGCGTTGGCCTGGTGCGCGTTGAGCGTGCGGTGAAAGAGCGTCTGTCT CTGGGCGATCTGGATATGCTGATGCCGCAGGACATGATCAACGCCAAGCCGATTTCGGCGGCGGTGAAAGAGTTCTTCGG CTCCAGCCAGCTGTCCCAGTTTATGGACCAGAACAACCCGCTGTCTGAGATCACCCACAAGCGTCGTATCTCTGCGTTGG GCCCGGGCGGTCTGACCCGTGAGCGCGCCGGCTTTGAAGTTCGAGACGTACACCCGACCCACTATGGTCGCGTATGCCCT ATCGAAACGCCGGAAGGTCCGAACATCGGTCTGATCAACTCCCTGTCCGTGTACGCACAGACTAACGAGTATGGTTTCCT GGAAACCCCGTACCGCCGCGTGCGTGACGGTATCGTGACCGACGAAATTCACTACCTGTCTGCTATTGAAGAAGGCAACT TCGTTATCGCCCAGGCGAACTCCAACCTGGATGAAGAAGGCCGCTTCGTAGAAGATCTGGTTACCTGTCGTAGCAAGGGC GAATCCAGCCTGTTCAGCCGTGACCAGGTCGACTACATGGACGTTTCCACCCAGCAGGTGGTTTCCGTCGGTGCGTCCCT GATCCCGTTCCTGGAACACGATGACGCCAACCGTGCTCTGATGGGTGCGAACATGCAGCGTCAGGCCGTGCCGACCCTGC GCGCTGACAAACCGCTGGTAGGTACCGGTATGGAGCGCGCCGTTGCGGTTGACTCAGGTGTAACCTCCGTAGCCAAGCGC GGCGGTATGGTGCAGTACGTGGATGCGTCCCGTATCGTCATCAAGGTTAATGAAGATGAGATGTTCCCGGGCGAAGCCGG CATCGATATCTACAACCTGACCAAATACACCCGTTCCAACCAGAACACCTGCATCAGCCAGATGCCGTGTGTTTCTCTGG GTGAGCCGATTGAGCGCGGCGACGTGCTGGCCGACGGCCCGTCCACCGATCTGGGTGAGCTGGCGCTGGGTCAGAACATG CGCGTCGCGTTCATGCCGTGGAACGGCTACAACTTCGAAGACTCCATCTTGGTCTCCGAGCGCGTGGTACAGGAAGATCG CTTCACCTCTATCCATATCCAGGAGCTGGCCTGTGTGTCTCGTGACACCAAGCTGGGGCCGGAAGAGATCACTGCCGACA TCCCGAACGTCGGTGAAGCAGCGCTCTCCAAGCTCGACGAATCCGGTATCGTGTATATCGGCGCCGAAGTGAAGGGTGGC GACATTCTGGTCGGTAAGGTAACGCCGAAGGGCGAAACCCAGCTGACGCCGGAAGAGAAGCTGCTGCGCGCGATCTTCGG TGAGAAAGCGTCTGACGTTAAAGACTCTTCTCTGCGCGTACCGAACAGCGTTTCCGGTACCGTTATCGACGTTCAGGTCT TTACCCGCGATGGCGTGGAAAAAGACAAGCGTGCGCTGGAAATCGAAGAGATGCAGCTGAAGCAGGCCAAAAAAGACCTG ACTGAAGAGCTGCAGATCCTGGAAGCCGGTCTGTTTGCCCGTATTCACGATGTGCTGGTTGCCGGCGGCGTGGAAGCGGA GAAGCTGGAAAAACTGCCGCGTGACCGTTGGCTTGAGCTGGGCCTGGCCGATGAAGCCAAGCAGAATCAGCTGGAGCAGC TGGCTGAGCAGTATGACGAGCTGAAGGCCGAGTTCGAGAAGAAGCTGGAAGCGAAACGCCGTAAGATCACCCAGGGCGAC GATCTGGCGCCGGGCGTGCTGAAGATCGTTAAGGTGTACCTGGCGGTGAAACGTCAGATCCAGCCGGGCGATAAGATGGC AGGTCGTCACGGTAACAAGGGTGTTATCTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAGAACGGGACTCCGG TCGACATCGTACTGAACCCGCTGGGCGTACCGTCGCGTATGAACATTGGTCAGATCCTGGAAACCCATCTGGGTATGGCG GCGAAAGGTATCGGCGATAAGATCAACGCCATGCTTAAGCAGCAGCAGGAAGTGGCCAAGCTGCGTGAGTTTATCCAGAA AGCCTACGATCTGGGTGATCACACCCGTCAGCAGGTGGATCTGAACACCTTCACCGACGAAGAAGTCCTGCGTCTGGCCG AAAACCTGAAGAAAGGTCTGCCGGTTGCAACGCCGGTGTTCGACGGTGCTAAAGAGCGCGAAATCAAGGGCCTGCTGGAG CTGGGTGGTATCCCGACCTCCGGTCAGATCACCCTGTATGATGGTCGTACCGGTGAGCGTTTCGAGCGTCAGGTAACCGT GGGTTACATGTACATGCTGAAGCTGAACCACTTGGTCGACGACAAGATGCATGCGCGTTCCACCGGCTCCTACAGCCTGG TTACCCAGCAGCCGCTGGGTGGTAAGGCGCAGTTCGGTGGTCAGCGCTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCC TACGGCGCCGCCTACACCCTGCAGGAAATGCTCACCGTTAAGTCTGATGACGTGAACGGCCGTACCAAGATGTATAAGAA CATCGTGGATGGCAGCCATCAGATGGAACCAGGCATGCCGGAATCCTTCAACGTACTGTTGAAAGAAATCCGCTCGCTGG GCATCAACATCGAGCTGGAAGACGAGTAA Protein sequence : MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVF DVKECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSD KGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALDFTTEQILDLFFDKVIFEIRDNKLQME LVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIVGKVAAKDYIDESTGELICAANMELSLD LLAKLSQSGYKRIETLFTNDLDHGPYMSETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAV GRMKFNRSLMRDEIEGSGILSKDDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS LGDLDMLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCP IETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRDGIVTDEIHYLSAIEEGNFVIAQANSNLDEEGRFVEDLVTCRSKG ESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTSVAKR GGMVQYVDASRIVIKVNEDEMFPGEAGIDIYNLTKYTRSNQNTCISQMPCVSLGEPIERGDVLADGPSTDLGELALGQNM RVAFMPWNGYNFEDSILVSERVVQEDRFTSIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVKGG DILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNSVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL TEELQILEAGLFARIHDVLVAGGVEAEKLEKLPRDRWLELGLADEAKQNQLEQLAEQYDELKAEFEKKLEAKRRKITQGD DLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMA AKGIGDKINAMLKQQQEVAKLREFIQKAYDLGDHTRQQVDLNTFTDEEVLRLAENLKKGLPVATPVFDGAKEREIKGLLE LGGIPTSGQITLYDGRTGERFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEA YGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGSHQMEPGMPESFNVLLKEIRSLGINIELEDE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 71 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 71 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_003294233.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | CP001138.1.gene4362. | Protein | 0.0 | 96 |
| rpoB | YP_003294233.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | CP000034.1.gene3741. | Protein | 0.0 | 96 |
| rpoB | YP_003294233.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | CP001918.1.gene250.p | Protein | 0.0 | 96 |
| rpoB | YP_003294233.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | NC_002695.1.914942.p | Protein | 0.0 | 96 |
| rpoB | YP_003294233.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | CP000647.1.gene4402. | Protein | 0.0 | 96 |
| rpoB | YP_003294233.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | CP004022.1.gene2794. | Protein | 0.0 | 93 |
| rpoB | YP_003294233.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | NC_002516.2.881699.p | Protein | 0.0 | 73 |
| rpoB | YP_003294233.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | NC_009085.4918494.p0 | Protein | 0.0 | 71 |
| rpoB | YP_003294233.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | NC_010410.6003841.p0 | Protein | 0.0 | 71 |
| rpoB | YP_003294233.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | NC_011586.7046027.p0 | Protein | 0.0 | 71 |
| rpoB | YP_003294233.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | NC_010400.5987325.p0 | Protein | 0.0 | 71 |
| rpoB | YP_003294233.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | NC_010611.6233925.p0 | Protein | 0.0 | 71 |
| rpoB | YP_003294233.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | NC_011595.7060572.p0 | Protein | 0.0 | 71 |
| rpoB | YP_003294233.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | CP000675.2.gene392.p | Protein | 0.0 | 69 |
| rpoB | YP_003294233.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | NC_008702.1.4609796. | Protein | 0.0 | 66 |
| rpoB | YP_003294233.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | CP002695.1.gene18.p0 | Protein | 0.0 | 65 |
| rpoB | YP_003294233.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | NC_011035.1.6448762. | Protein | 0.0 | 64 |
