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Name : Smon_0481 (Smon_0481) Accession : YP_003305838.1 Strain : Streptobacillus moniliformis DSM 12112 Genome accession: NC_013515 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 557250 - 560708 bp Length : 3459 bp Strand : + Note : KEGG: bha:BH0126 DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 7; RNA polymerase Rpb2 domain 3; RNA polymerase beta subunit DNA sequence : ATGAATAACAAACTAATTAAAAGATATAGTTTTGGGAAAATTAAAGATAGGGGAGAAATGCCCAATTTTTTAGAATTTCA GCTAGATTCTTATGAAGATTTTTTACAAACAAAAAGATCTTATGATGTAAGAGAATTAAAAGGACTTGAGGCAATATTCC AAGAAACATTCCCAATAGAATCTGCTAATGGTACTTTAAAATTAGAATATTTTGGGTATGAAATACATGATAGTGAGGCA CCATTAAATGACGAGTTAGAATGTAAAAAAAGAGGAAAAACATATTCAGGTCAATTAAAAGTTAGATTAAGATTAACTAA TAATAAAACTGGAGAAATTAAGGAAACATTGGTACATTTTGGAGATATACCTTTGATGACTGATAAAGCTACTTTCATAA TAAATGGAGCAGAAAGGGTAGTTGTTTCTCAATTACATAGATCACCAGGTATTACCTTTAATAAGGAATTAAATATGCAA ACTGGTAAAGATATGTTTATTGGTAAAATTATTCCATATAAAGGAACTTGGCTTGAATTTGAAACAGATAAAAATGATGT TTTAAATGTGAAAATTGATAGAAAGAAAAAAGTATTAGCATCTGTATTTTTAAAAGCAATTAAATTTTTTGAAAATAATT CTGAAATAATGGATGAATTTTTTGAAATTAAAACTATAGAGCTTGAACCTATATATAAGAAATATAAGAATATAGAAGAT GCTAAAAGCGTTATTAGAACAGAAATAGAAGGTTCATTTGTTAATGAAGATATAGTAAATGAAAAAACAGGAGAAATAGT AATAGAATCAGAAAGTTTCATAGATGAGATTACTGTAGATAAGTTAATTGAATATAACATTCCTGAAATTACTATATGGG AAGTAAAACCAGAAGATAGAATGATAGCTAAATCAATTAAAGATGATCATACTAAATCATCTGATGAAGCTGTAGTAGAA GTATTTAAAAAAATAAAACCAGGGGATATAGTTACAGTAGAGAGTGCATATAATTTAATTATACCTATGTTCTTTAATCC TCAAAGATATGATTTTGCACCAGTTGGAAGATATAAGATCAATAAGAGATTAAAACTTGAAGGTGAAATCAATGAGCAAG ATATAGTATTAACAAAAAAAGATGTAATAGCAACTATAAATTACTTGAAAGTTCTATATAACGGTGGGGGAAGCACTGAT GATATAGATAATTTATCAAATAGAAGGGTAAGAGGAGTAGGAGAGCTACTATCTATACAAATTAAAGGTGGAGTAGCTAA AATGTCTAAAATGGTTAAAGAAAAAATGCAAACTCAAGACATTAATACTTTAACACCTCAAAGCCTATTAAATACTAAAC CATTAAATGCATTAATATTAGAATTTTTTGGTAGTGGACAATTATCTCAATTTATGGATCAATCAAATCCACTTGCTGAA CTTACTCATAAAAGAAGAATATCTGCTTTAGGACCTGGAGGATTATCAAGGGATAGAGCAGGATTTGAGGTTAGAGACGT TCATAATTCTCATTATGGAAGAGTTTGTCCAATAGAAACTCCAGAAGGACCAAATATAGGGTTAATAGCTTCACTTTCAA CTTATGGTAAAGTAAATAAATATGGATTTATTGAAACTCCTTTCGTTAAAGTTAAAGATGGAGTAGCTGATTTTAATGAT ATTAGTTATCTTGCAGCTGATGAAGAAGAAGGATTATTTATAGCCCAAGCAGATACTAATATAGATGAAAAAGGAAGATT ACTTGATAATGATGTTACATGTAGATATGGTGATGAAATAGTTCATGTTAAAAAAGAACAAGTTGATTTAATGGATGTTT CACCTAAACAAATAGTTTCAGTATCAGCAGGATTAATTCCATTTTTAGAACATGATGATGCTAACCGGGCATTAATGGGT TCAAATATGCAAAGACAAGCAGTACCATTACTTAAAACAGAAGCTCCTTATGTAGGAACAGGTCTTGAAAGAAAAGTTGC TATAGATTCTGGAGCTGTACTTGTATCAAAAGTAAAAGGAGAGGTTACTTATGTTGATGCAAGTAAGATTATAGTTACAG ATAAAAAAGGAGATGAACATTTACATAGATTATTAAATTTTGAAAAATCTAACCAAAGTATGTGTTTACATCAAAAACCA ATAATAGATTTAGGAGATAAAGTAAATAAAGGGGACATATTAGCAGATGGACCATCTACTTCAGGTGGAGATTTATCTTT AGGTAAAAATATATTACTTGCATTCATGCCTTGGGAAGGATATAACTTTGAGGATGGAATATTAATATCAGAAAGATTAA GAAAAGATGATGTATTCACATCACTTCACATAGAAGAATTTGATATTGAAGCAAGAACTACAAAACTTGGAGAAGAAGAA ATTACAAGAGAAATACCTAATGTATCTGAAGAAGCTTTACGTAATTTAGATAAAGACGGTATTGTAAGAATAGGTGCTTA TGTTGAACCAGATGATATCTTAGTTGGTAAGGTAACTCCTAAAGGAGAAAGTGAACCACCTGCTGAAGAAAGATTATTAA GAGCAATCTTTGGAGAAAAAGCTAAAGATGTAAGAGATACATCATTAAGATTACCACATGGAGTTAAAGGTACAGTAGTA GATGTATTGGTATTATCTAAAGAAAACAAAGATGATTTAAAAGCAGGAGTAAATAAAGTAGTAAGAGTTTATGTTGCAGA AAAAAGAAAAATAATGGTTGGAGATAAAATGTCAGGAAGACATGGTAATAAGGGGGTTATATCTCGTGTATTACCAGTTG AAGACATGCCACATTTAGAAGATGGTACTCCAGTTGATGTTTGTTTAAATCCATTAGGGGTTCCATCTCGTATGAATATA GGGCAAGTATTAGAAGTTCACTTGGGACTTGCTATAGGAGATATGAACAAATATATTGCAACACCAGTATTTGATGGTGC AACTGAAGAAGATGTTAAAAATTATTTAGAAGAAGCTGGATATCCTAGAACTGGAAAAGTTAAGCTAATTGATGGTAGAA CTGGAGAATATTTTGACAATCCAGTAACAGTAGGAAGAATGTACATGTTAAAATTACATCATTTAGTTGAAGATAAAATG CATGCTAGAGCAATAGGACCATATTCACTAGTTACTCAACAACCACTTGGAGGTAAAGCTCAATTTGGTGGACAAAGATT AGGGGAAATGGAAGTTTGGGCTCTTGAAGCATATGGAGCTTCAAATATCCTTCAAGAAATGTTGACTGTTAAATCAGATG ACATTAATGGTAGAACTAAAACTTATGAATCAATAATTAAAGGACAATCAATGCCAGAAGCAGATGCTCCTGAATCATTT AAAGTATTGATTAAAGAGTTCCAATCTTTAGGACTGGATGTAAATCTATATAATAAAGAGGGAGAAAAAATAGAATTAGA CAATAACTTTGAAGGATAA Protein sequence : MNNKLIKRYSFGKIKDRGEMPNFLEFQLDSYEDFLQTKRSYDVRELKGLEAIFQETFPIESANGTLKLEYFGYEIHDSEA PLNDELECKKRGKTYSGQLKVRLRLTNNKTGEIKETLVHFGDIPLMTDKATFIINGAERVVVSQLHRSPGITFNKELNMQ TGKDMFIGKIIPYKGTWLEFETDKNDVLNVKIDRKKKVLASVFLKAIKFFENNSEIMDEFFEIKTIELEPIYKKYKNIED AKSVIRTEIEGSFVNEDIVNEKTGEIVIESESFIDEITVDKLIEYNIPEITIWEVKPEDRMIAKSIKDDHTKSSDEAVVE VFKKIKPGDIVTVESAYNLIIPMFFNPQRYDFAPVGRYKINKRLKLEGEINEQDIVLTKKDVIATINYLKVLYNGGGSTD DIDNLSNRRVRGVGELLSIQIKGGVAKMSKMVKEKMQTQDINTLTPQSLLNTKPLNALILEFFGSGQLSQFMDQSNPLAE LTHKRRISALGPGGLSRDRAGFEVRDVHNSHYGRVCPIETPEGPNIGLIASLSTYGKVNKYGFIETPFVKVKDGVADFND ISYLAADEEEGLFIAQADTNIDEKGRLLDNDVTCRYGDEIVHVKKEQVDLMDVSPKQIVSVSAGLIPFLEHDDANRALMG SNMQRQAVPLLKTEAPYVGTGLERKVAIDSGAVLVSKVKGEVTYVDASKIIVTDKKGDEHLHRLLNFEKSNQSMCLHQKP IIDLGDKVNKGDILADGPSTSGGDLSLGKNILLAFMPWEGYNFEDGILISERLRKDDVFTSLHIEEFDIEARTTKLGEEE ITREIPNVSEEALRNLDKDGIVRIGAYVEPDDILVGKVTPKGESEPPAEERLLRAIFGEKAKDVRDTSLRLPHGVKGTVV DVLVLSKENKDDLKAGVNKVVRVYVAEKRKIMVGDKMSGRHGNKGVISRVLPVEDMPHLEDGTPVDVCLNPLGVPSRMNI GQVLEVHLGLAIGDMNKYIATPVFDGATEEDVKNYLEEAGYPRTGKVKLIDGRTGEYFDNPVTVGRMYMLKLHHLVEDKM HARAIGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGASNILQEMLTVKSDDINGRTKTYESIIKGQSMPEADAPESF KVLIKEFQSLGLDVNLYNKEGEKIELDNNFEG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 46 |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Smon_0481 | YP_003305838.1 | DNA-directed RNA polymerase subunit beta | AE000516.2.gene708.p | Protein | 0.0 | 56 |
| Smon_0481 | YP_003305838.1 | DNA-directed RNA polymerase subunit beta | CP001581.1.gene3846. | Protein | 0.0 | 53 |
| Smon_0481 | YP_003305838.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 47 |
| Smon_0481 | YP_003305838.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 47 |
| Smon_0481 | YP_003305838.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 47 |
| Smon_0481 | YP_003305838.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 47 |
| Smon_0481 | YP_003305838.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 47 |
| Smon_0481 | YP_003305838.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 46 |
| Smon_0481 | YP_003305838.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 46 |
| Smon_0481 | YP_003305838.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 46 |
| Smon_0481 | YP_003305838.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 46 |
| Smon_0481 | YP_003305838.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 46 |
| Smon_0481 | YP_003305838.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 46 |
| Smon_0481 | YP_003305838.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 46 |
| Smon_0481 | YP_003305838.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 44 |
